Query= MSMg01no048_m21.b1 MSMg01no048_m21.b1 CHROMAT_FILE:
MSMg01no048_m21.b1 PHD_FILE: MSMg01no048_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:09 2005
(765 letters)
>mm_chr15_6955240_6956400
Length = 1161
Score = 1218 bits (630), Expect = 0.0
Identities = 645/652 (98%), Gaps = 4/652 (0%)
Strand = Plus / Minus
Query: 114 taagcaaaaattcaatatttcctgtgtgcttccttgccaaatttccttaactctacaaat 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 taagcaaaaattcaatatttcctgtgtgcttccttgccaaatttccttaactctacaaat 1102
Query: 174 tcagatttctgtgttcaaatcccagctccagcatggatgagcaaggttgccttttagata 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 tcagatttctgtgttcaaatcccagctccagcatggatgagcaaggttgccttttagata 1042
Query: 234 atctagatgctccggccatgcctctgtttcctcatatgtcaaatgaggactacaccacct 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 atctagatgctccggccatgcctctgtttcctcatatgtcaaatgaggactacaccacct 982
Query: 294 ccttacaggactattataagttgctaagccttgtcctaaacaagaatccattgtgtagtg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 ccttacaggactattataagttgctaagccttgtcctaaacaagaatccattgtgtagtg 922
Query: 354 cctctattaactttgtaatttgaagaaagaatcctcacaaaggttaagtaggaatgctgc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 cctctattaactttgtaatttgaagaaagaatcctcacaaaggttaagtaggaatgctgc 862
Query: 414 caaggctgaaatctaaatttgacttctatgccttatctttttccttgatgactcctcctg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 caaggctgaaatctaaatttgacttctatgccttatctttttccttgatgactcctcctg 802
Query: 474 aactcacctttcctggaaaccagtccattcttctttctggacctagttctgtactaaatt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aactcacctttcctggaaaccagtccattcttctttctggacctagttctgtactaaatt 742
Query: 534 atctggaccaattcagaatttctggagatgtggccaaggaagttgcatttccattggttc 593
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 atctggaccaattcagaatttctggagatgtggccaaggaagctgcatttccattggttc 682
Query: 594 tctgactactctgattgttgccaggacccaacaactcaggaaaatctctgcagtaactgc 653
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 tctgactactc----tgttgccaggacccaacaactcaggcaaatctctgcagtaactgc 626
Query: 654 cattgggctagcttttgctgcttgcccctgatcctggaagtgccccaaatctatcttgtt 713
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 625 cattgggctagcttttgctgcttgcccctcatcctggaagtgccccaaatctatcttgtt 566
Query: 714 acatgtttttgctatcttggctgtacacccctcttgtgctatttcacgacct 765
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acatgtttttgctatcttggctgtacacccctcttgtgctatttcacgacct 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 765
Length of database: 1161
Length adjustment: 10
Effective length of query: 755
Effective length of database: 1151
Effective search space: 869005
Effective search space used: 869005
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_m21.g1 MSMg01no048_m21.g1 CHROMAT_FILE:
MSMg01no048_m21.g1 PHD_FILE: MSMg01no048_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:09 2005
(745 letters)
>mm_chr15_6943173_6944316
Length = 1144
Score = 1332 bits (689), Expect = 0.0
Identities = 728/741 (98%), Gaps = 2/741 (0%)
Strand = Plus / Plus
Query: 5 taagaaagaaactaagaagacattgattttgaggtaggtcttaatgaagggctgggccag 64
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 taagaaagaaactaagaagacattgattttgaggtaggtcggaatgaagggctgggccag 264
Query: 65 ggccaggatttcagaccttgcaatattttgccttctgggagagtgtctgtaggctgatga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggccaggatttcagaccttgcaatattttgccttctgggagagtgtctgtaggctgatga 324
Query: 125 taatgatgacagttggccaggagcctttgcagatgcatttcccaagcttttccagactta 184
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatgatgacagttggccaggcgcctttgcagatgcatttcccaagcttttccagactta 384
Query: 185 atgagtccatagagcttcccacaggccagagctgccgtgttagtcctaagtaactacact 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 atgagtccatagagcttcccacaggccagagctgtcgtgttagtcctaagtaactacact 444
Query: 245 aaggaacgaggagggtctcagtgagtgatggtgacagttgagggacaatctcagttttaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaggaacgaggagggtctcagtgagtgatggtgacagttgagggacaatctcagttttaa 504
Query: 305 ttctcacattccttgcttggaatggctcaaccaggaggctcaggccaaagaatgactgca 364
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 ttctcacattccttgcttggaatggctcaaccaggaggcacaggccaaagaatgactgca 564
Query: 365 agtgtgagattttgagaaaggctagagaatgttccatgtgtgcctttacccccctgtcct 424
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 agggtgagattttgagaaaggctagagaatgctccatgtgtgcctttacccccctgtcct 624
Query: 425 ggttcttttaacagctgccgtctgagcctgctacctctgcctgttacaacaggtgcttgc 484
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 625 ggttcttttaacagctgccgtctgagc-tgctacctctgcctgttacaacaggtgcttgc 683
Query: 485 tgaaccctggagctccccagaactgccccagtagtctcctgaggctcaacaccttcaaat 544
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 684 tgaaccctggagctccccagaactgcctcaggagtctcctgaggctcaacaccttcaaat 743
Query: 545 ttaggtgttttggttctgtgtctccagagagaagatccatctttctcccaaattctttgg 604
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 744 ctaggtgttttggttctgtgtctccagagagaagatccatcattctcccaaattctttgg 803
Query: 605 caggtagacacaggcatcggctaggcctcttcagatgggccagggaagacgctgactttg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caggtagacacaggcatcggctaggcctcttcagatgggccagggaagacgctgactttg 863
Query: 665 agagtcaggcatggtgccacatgcctgtaatcccagcacttgggaggtggaggcgagaat 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 agagtcaggcatggtgccacatgcctgtaatcccagcacttgggaggtggaggcgagaat 923
Query: 725 atcgggaccctcaaggccagc 745
||||||||| |||||||||||
Sbjct: 924 atcgggacc-tcaaggccagc 943
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 745
Length of database: 1144
Length adjustment: 10
Effective length of query: 735
Effective length of database: 1134
Effective search space: 833490
Effective search space used: 833490
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
