Query= MSMg01no049_i11.b1 MSMg01no049_i11.b1 CHROMAT_FILE:
MSMg01no049_i11.b1 PHD_FILE: MSMg01no049_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:38 2005
(492 letters)
>mm_chr15_12850779_12851671
Length = 893
Score = 835 bits (432), Expect = 0.0
Identities = 472/488 (96%), Gaps = 7/488 (1%)
Strand = Plus / Minus
Query: 5 gaattc-acttcagaataaatctaccctt---aaaaccacggacacagccaggctgacaa 60
|||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 689 gaattcaacttcagaataaatcta---tttggcaaaccacggacacagccaggctgacaa 633
Query: 61 cagaaacacccctgcgaggttctggggctagcacgccggcagggcaggctgatggcttca 120
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 632 cagaaacaaagctgcgaggttctggggctagcacggtggcagggcaggctgatggcttca 573
Query: 121 ccgggttggcgctgagtgctgaggacccagcaggaccaacagcatccttttacagtgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ccgggttggcgctgagtgctgaggacccagcaggaccaacagcatccttttacagtgctt 513
Query: 181 cagaagggacccactcctaagaaagccacacaccagccagcgacgacaatcaccggactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cagaagggacccactcctaagaaagccacacaccagccagcgacgacaatcaccggactg 453
Query: 241 atggagatgcgagcagacgcaggaacacacagctgcaaatcttagccaagctgtctagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atggagatgcgagcagacgcaggaacacacagctgcaaatcttagccaagctgtctagag 393
Query: 301 aaggtcacctaggaaaccctctcaagaacattctagtcaacttccatactgaggtctacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaggtcacctaggaaaccctctcaagaacattctagtcaacttccatactgaggtctacg 333
Query: 361 aggtttctccagcactggagcccacattcctccaaacaccaagggatcagaattttgaac 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aggcttctccagcactggagcccacattcctccaaacaccaagggatcagaattttgaac 273
Query: 421 tctgcactagggatgcaagcttttcaaaaaggttcacgtggattctgatgaacaccgaat 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 272 tctggactagggatgcaagcttttcaaaaaggttcacgtggattctgatgaacacagaat 213
Query: 481 ttgaccta 488
||||||||
Sbjct: 212 ttgaccta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no049_i11.g1 MSMg01no049_i11.g1 CHROMAT_FILE:
MSMg01no049_i11.g1 PHD_FILE: MSMg01no049_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:38 2005
(397 letters)
>mm_chr15_12736549_12737345
Length = 797
Score = 543 bits (281), Expect = e-159
Identities = 367/407 (90%), Gaps = 25/407 (6%)
Strand = Plus / Plus
Query: 1 aaatgaagcattcccaggacctcagcaccccttaataatttacatccaccccaacctgct 60
||||||||| ||||||| ||| ||||||| |||||||||||||| |||||||||||
Sbjct: 206 aaatgaagcgttcccagcaccgcagcaccagttaataatttacat----cccaacctgct 261
Query: 61 acctactccccaaggtttatatagcccttattaaccccctaataaagaagctgtaacact 120
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 262 acccactccccaaggtttatatagcccttattaaccccctaataaagaagcggtaacact 321
Query: 121 gaaaactgtctcagagaacgcttcttcccccac-aacacaaccccccccccccaccttcg 179
|||||| |||||||||| ||||||||| |||| || |||| |||||||||| |||
Sbjct: 322 gaaaac--tctcagagaaggcttcttcctccacaaaaacaa-----cccccccaccatcg 374
Query: 180 --cccccca---ccggcattcaagacaagtgtgttcctgcaaacccacccggcctggata 234
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 375 ccccccccacccccggcattcaagacaagcgtgttcctgcaaacccacccggcctggata 434
Query: 235 agcctggacaaacctgcttatgctttcatgccaggcagctgagctacagtgcctgaacac 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agcctggacaaacctgcttatgctttcatgccaggcagctgagctacagtgcctgaacac 494
Query: 295 acggaaggcagaagcagaactggcctgcgctgtttttt----agccagaagtctcatccc 350
|||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 495 acggaaggcagaagcagaactggcctgcgctggt----gcccagccagaagtctcatccc 550
Query: 351 tgctgactactgtccacggtgctgcaaggtactttgcatgttggagg 397
||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 551 tgctgactactgtccacagtgctggaaggtactttgcatgttggagg 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
