BAC Information

Click to search

BAC

Clone NameMSMg01-050D21
Chromosome15 (Build37)
Map Location 46,837,302 - 46,837,684
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039438
Downstream geneLOC665130, LOC100039485, LOC100039493, Csmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050D21.T7 (MSMg01no050_d21.b1)MSMg01-050D21.TJ (MSMg01no050_d21.g1)
ACCAG279384AG279385
length1,0121,195
length of high quality
(start - end)
403 (10 - 412)384 (71 - 454)
definitionCHROMAT_FILE: MSMg01no050_d21.b1 PHD_FILE: MSMg01no050_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:17 2005CHROMAT_FILE: MSMg01no050_d21.g1 PHD_FILE: MSMg01no050_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCTAATTTTGATGACTGCTTTTATTTCTTTAGGAGTTATTGGACTGT
TTAGATGGTTTATCTGATCCTGACTTAACTTTGGTATTTGATATCTGTCT
ACAAAATTGCCCATTTCATCCAGATTTTCCAGTTGTTTTGAGTATAGACT
GTTTTTTATAGCTCCCTTTTCATTTCTAATTTTTGTAATTTAGATACTGT
CTCTGTAACCTCTAGTTAGTCTGGCTAAGGGTTTATCTATCTTGTTGATT
TTCTCAAAGAACAAGCTCCAAGTCTTGCTGATTCTTTGTATAGTTCTTTT
TGTTTCCACTTGGTTGATTTCAGCCATGAGTGTGATTATTTCCTGCCCTC
TACTCCTCTTGGGTGTATTTGCTTTTTTAAAGTTCACTCTTACAAAAAGC
ATTTAATGAAAAGGAGCAAACTGAGAAAAGACAAAAATGAAATATTTGGT
TTGAGTATTGAAGGGGTACCAGGAAGCAAAATGGAACTGAGTCTTATGTT
TTAGTAGATAACAGATTAAGGGAGTGGGACTTTGTGACCAGATCTCACCC
AGTTCAGTTTAAGTCCACGTATAGCATAGTGGTACATACCTTTACTCCAT
GATAGAGAGATAGATAGAGAGATACCAGAGAGATAGAGAGATATATAGTG
ATATTCTTCTCTTTCTTTGCTTCATCTTCCCCTGTTCCTTTATCCATTTC
TGGATATGAAATTTCTTTCCTCTTGCTCTCGATGAAACATCCCTTTTAAT
TTCTGATATATCTTTGTAATCTTTTATTTCTCAATTTTCCATATACTATT
TTCTATACCTTGTTTTTTTTTTATTTTTATATTTATTCTTTTTATCATTT
TTCTACTTTTTCTATCTCTCTTTTTTATTTTCTCTTCTCTTTTTTTCTTT
TTTTCTTTTCTTCTTATTCTTTTTTTACTTCTTCCCTTTTTTCTTCCTTC
TCTTCTTTATTACACTCCTTTCTTTTTAATTCTTATTCTTTTCTTTCTTC
ACTTTTCTTACC
NNTTATTGATGGATGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTGAAAATACAGCAGGGAATGTTTGGGAA
CATCAGCAGTAGACACATGGGTAAACTATAAATATAGTCAAGAAGCAGAT
AGCCATGCATGTTAGAGCTCAGCTCAATGTACCCTCTTCCTTGATTCTTG
CTGTTCTGTAGAAGAGGTATCAGTCTTCTCTATTAACTTAATATGAATTA
AATCTTGCAAAAGCATTCCCAGAAAATTGGGTTTACACTGATATGGGATC
ATGTCATGATGTCAATTAATATACACACTGATAAAAACAATCACATATTG
TTTGAAATATGAGTTCATCCTCGAACACAAAAGCCAGATAAAGCAGTCCA
ATTATGGGAATAGGATCCACAGGTAGGTATCAGAGTTAAGGAGCCCTTGC
TCCTTTTGTCCCCCCACCCTTATGAAGCACAAGCTGCATATATCACTAGT
AAGTGCAGGAATTCTTGGTTTAACCCATGCTAAAACTTCGGTAAGTGGTT
CAGTCTCTGGGAGCTCCCAAGAGCCCAGGTAATTGGTCTTCCTGTGAAAT
TTCTATCCCTTCAGTTCCCTCAATCTTTCTCCAACTCTTCCATAAGACTC
CCCTTACTCAATGTAATATTTGGCTATGGGTCTCTGCATCTGTTTCAGTC
AGCTATCTAGCTAGAGCCTCTCAGAGGAGAGGTATGCTAAGCTCCTGTCT
ACAACCCTCACAAAGTATTATTTAATAGTAGCAGGTATTGGTTCTTGCCC
ATAGGATCAAGTCCCAAATTTGCGCCCGTCATTTCTTTGTTTGGCTTATT
CCTCAAGAATCTGTTTCCATCCTTTGCCCCCAGAACGTCCTTGCCTATCT
AATTCATGGTCTACAATAATGGTGGTTTCATTTTCCCTCCTTTAAATCCC
CTACCTCCGCTTTATTTTAAAACCCCCTTACCTTTTTTTTGAAATCTTTT
GTTCTCGCTACATTTAAAAATTCAGTCTTTCCTAATATAAAAAACTATTT
TTTTTCTCTTTTCCCCATTTTTCTAATTTTTTTTTTTCTCGGACNCCATT
TTTCTCATCTTTTTATATGGGTGGCCTTTTAAATATGTCTTATTTCCAAT
CATTTTTTTCACAAAAGATAAAACATAATCTTTCTATAACACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_d21.g1 MSMg01no050_d21.g1 CHROMAT_FILE:
MSMg01no050_d21.g1 PHD_FILE: MSMg01no050_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:17 2005
         (384 letters)



>mm_chr15_46836997_46837780
          Length = 784

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaaaatacagcagggaatgtttgggaacatcagcagtagacacatgggtaaactata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 attgaaaatacagcagggaatgtttgggaacatcagcagtagacacatgggtaaactata 629

                                                                       
Query: 61  aatatagtcaagaagcagatagccatgcatgttagagctcagctcaatgtaccctcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatatagtcaagaagcagatagccatgcatgttagagctcagctcaatgtaccctcttcc 569

                                                                       
Query: 121 ttgattcttgctgttctgtagaagaggtatcagtcttctctattaacttaatatgaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 568 ttgattcttgctgttctgtagaagaggtatcagtcttctctattaacctaatatgaatta 509

                                                                       
Query: 181 aatcttgcaaaagcattcccagaaaattgggtttacactgatatgggatcatgtcatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aatcttgcaaaagcattcccagaaaattgggtttacactgatatgggatcatgtcatgat 449

                                                                       
Query: 241 gtcaattaatatacacactgataaaaacaatcacatattgtttgaaatatgagttcatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtcaattaatatacacactgataaaaacaatcacatattgtttgaaatatgagttcatcc 389

                                                                       
Query: 301 tcgaacacaaaagccagataaagcagtccaattatgggaataggatccacaggtaggtat 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 388 tcgaacacaaaagccagataaagcagtccaattaggggaataggatccacaggtaggtat 329

                                  
Query: 361 cagagttaaggagcccttgctcc 383
           |||||||||||||||||||||||
Sbjct: 328 cagagttaaggagcccttgctcc 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)