BAC Information

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BAC

Clone NameMSMg01-050N05
Chromosome15 (Build37)
Map Location 20,576,781 - 20,577,419
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050N05.T7 (MSMg01no050_n05.b1)MSMg01-050N05.TJ (MSMg01no050_n05.g1)
ACCAG279783AG279784
length1,1991,202
length of high quality
(start - end)		652 (29 - 680)641 (74 - 714)
definitionCHROMAT_FILE: MSMg01no050_n05.b1 PHD_FILE: MSMg01no050_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:39 2005CHROMAT_FILE: MSMg01no050_n05.g1 PHD_FILE: MSMg01no050_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAACAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCAGGA
ATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGT
GTGTGGCGTTCATTTCTGGATCCATCCCATAATCAGCTTCCAAATGCTGA
CACCATTGCCTACACTAGCAAGATTATGCTGAAAGGACCCTGATATAGCT
GTCTCTTGTCAGAGTACGCCTGGGCCTAGCAAACATAGAAGTGGATCCTC
ACAGTCGGCTATTGCACGCATCACATGGCCTCCAATGAAGGAGCTAGAGA
AAGTACCCAAGAAGCTAAAGGGATCTGCAACCCTATAGGCGGAACCACCT
TATTCACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATC
AAAAGATGGCCTAGTCGGCCCTCACTGGAAAGAGAGGCCCATTGGAAACA
CTAATTTTATTTCGCCCCATTACGGGGGACCTCCGGTTTCTAATAAGGTC
CCTGGTTTGTTTTTTTCTACTTTTTTCTTCTTCCTTTTTTCTCCTTTTTT
CTTTCTCTCCTTTTATCTTTTTTTCTCTTCTTCTTTCTTTCTTTTTCTCT
CTCTTCTCCTCTCTCCCTTTTATTTCTTTATCTTCTTCTTTTTTTTTCAT
CTTTTCCTTTTTTCTTTTCTTTCTTTTTTCCCTTCTCCTTTCTTTTTCTT
CATATCCCTCTCTTATCAATTCGCTTCTTCTCCTCCTCTCTTCCTCTCC

TTTGTTTGTGATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTT
AATGGGGTTGTTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATA
TATTGGATATTAGTCCCCTATCTGATTTAGGATACGTATGGTTATTTGAT
AGTTATATTTATATAATCAACAGATTAATATGTCATTTCAGACTATTTCA
TTTATAAAAACTGTCTTATTTATTAAAAATTCTATTTGTTAAGTGAACAT
GTCTTCACAATTTTACATATGGTAGTTGATAGACAATATCTTTTCATGTG
AATTATTGAAAGTATAAAGGGAGAGAGACTATGTTTCACAACCTGCATGT
TTTAAAATTGTATCAATTTAACGAAAACTTGACAAAGTCATTACATAATT
TTACTACTTACTTAGTACACTTAGAATATCTGCTCACTGTCTGAAGGAAC
ATGATCCTGGAGAATGACGATGTTAATTTACTAATAGATATTAAGTCTAA
CAGAAAATCTAAGTAATACACTAATAAACTGTGTGCTTTTCACCTTTTTT
TTTCAATTGAAAATTCTTGGAACAGTTAAATCCAAGATGAAATACCCTTC
CGTTTCTTCCAAAAGTTTTCTTTGGAAGGAAGAAAGACCGGATGGTTTCT
TTGTTGTACTAAGATATTAACATTACAGGTCTTACAAAATTGGTTTGCTT
TCCCATACCCTTTTTTTCAACAATAGTCTCCTTTCCCACTTTCTTATAAT
GATACATGGACCTTTTGTTGATAATAAGATAGGTGGCGTTCCACTGATTC
TCTTTCTGTGATTCANTTCCTTTGTCCCTCTTGAATATTTAATTCTTACC
CTGTTTTTTTNATTTTTTTCCTTTTTTTTATTTTTGCTCTTTTTTCTATT
TTGTTATTTTTATTAATTGCTGGTTATTCTTTTCATGCGACTATAATCTT
TTTCTTTTTTTTCCTGGCTTCTTTTTTTCTTTTTTTTTTCTCTTTTTTGT
GTTTTATTTTTTCTTTATTTTATATCTCTTTTTTCCCCCTTACTTTTTCT
GTTTTCCACTTCTCACCTTCTCTTCATTCTACTCTTTTTTCTTTTTCTTC
ATTCTTTATCCTCTTTTCCCTTTCCACACTCTTTGTTCTCCTTACTTTCT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_n05.g1 MSMg01no050_n05.g1 CHROMAT_FILE:
MSMg01no050_n05.g1 PHD_FILE: MSMg01no050_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:39 2005
         (641 letters)



>mm_chr15_20576581_20577619
          Length = 1039

 Score = 1089 bits (563), Expect = 0.0
 Identities = 621/641 (96%), Gaps = 2/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgagccccattttttaatggggttgtttgattttctggagtccacctt 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgagtcccattttttaatggggttgtttgattttctggagtccacctt 260

                                                                       
Query: 61  cttgagttctttatatatattggatattagtcccctatctgatttaggatacgtatggtt 120
           |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 261 cttgagttctttatatatattggatattagccccctatctgatttagggtaggtatggtt 320

                                                                       
Query: 121 atttgatagttatatttatataatcaacagattaatatgtcatttcagactatttcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgatagttatatttatataatcaacagattaatatgtcatttcagactatttcattt 380

                                                                       
Query: 181 ataaaaactgtcttatttattaaaaattctatttgttaagtgaacatgtcttcacaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ataaaaactgtcttatttattaaaaattctatttgttaagtgaacatatcttcacaattt 440

                                                                       
Query: 241 tacatatggtagttgatagacaatatcttttcatgtgaattattgaaagtataaagggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacatatggtagttgatagacaatatcttttcatgtgaattattgaaagtataaagggag 500

                                                                       
Query: 301 agagactatgtttcacaacctgcatgttttaaaattgtatcaatttaacgaaaacttgac 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 agagactatgtttcacaacctgcatgttttaaaattgtatcaatttaatgaaaacttgac 560

                                                                       
Query: 361 aaagtcattacataattttactacttacttagtacacttagaatatctgctcactgtctg 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 561 aaagtcattacataattttactacttacttagtacgcttagaatatctgctcagtgtctg 620

                                                                       
Query: 421 aaggaacatgatcctggagaatgacgatgttaatttactaatagatattaagtctaacag 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 aaggaacatgatcatggagaatgacgatgttaatttactaatagatattaagtataacag 680

                                                                       
Query: 481 aaaatctaagtaatacactaataaactgtgtgcttttcacctttttttttcaattgaaaa 540
           ||||||||||||||| | ||||||||||||||||||||||  |||||||| |||||||||
Sbjct: 681 aaaatctaagtaatataataataaactgtgtgcttttcac--ttttttttaaattgaaaa 738

                                                                       
Query: 541 ttcttggaacagttaaatccaagatgaaatacccttccgtttcttccaaaagttttcttt 600
           |||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||
Sbjct: 739 ttcttggaacagttaaatccaagatgaaataagcttcagtttcttccaaaagttttcttt 798

                                                    
Query: 601 ggaaggaagaaagaccggatggtttctttgttgtactaaga 641
           ||||||||||||||  |||||||||||||||||||||||||
Sbjct: 799 ggaaggaagaaagaaaggatggtttctttgttgtactaaga 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1039
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1029
Effective search space:   649299
Effective search space used:   649299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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