BAC Information

Click to search

BAC

Clone NameMSMg01-050P22
Chromosome15 (Build37)
Map Location 82,141,149 - 82,141,585
singlet/doubletsinglet
Overlap geneWbp2nl
Upstream geneSlc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3
Downstream geneNaga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050P22.T7 (MSMg01no050_p22.b1)MSMg01-050P22.TJ (MSMg01no050_p22.g1)
ACCAG279901AG279902
length1,1901,199
length of high quality
(start - end)
502 (40 - 541)433 (70 - 502)
definitionCHROMAT_FILE: MSMg01no050_p22.b1 PHD_FILE: MSMg01no050_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:02 2005CHROMAT_FILE: MSMg01no050_p22.g1 PHD_FILE: MSMg01no050_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTCATTGGGCCTATXXXXXXXXXXXXXXXXXXXXXXCGCGCAATTCT
TTGTTTAGCTCTGTGCCCTTTTTTTTAATGGGGTTATTTGAATTTCTGGA
GTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATGAGTCCCCTATAAG
ATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCATTTTTGTC
TTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTCATGAGGTC
CCATTTGTTGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTGTTTA
GGACTTTTTCCCCTGTGCCCATATCTTTGAGGCTTTCCCCCACTTTCTCC
TCTATTAATTTCAGTGTCTCTGGTCTTATGGCTACATTTCTTTCTCTCGT
CACCTAGCCCCTCTTCTCTTCCAGGTTTCCAAAATGCCTTTCCAGGCTAG
AACCCAGCTTGTGGTCTGCTGGCCGGACACAACACCTTATGATTGGCATC
AGACTGCAAAGTCCACTCTCCGCCCAGGACAGTTTATAGTATGGAGGACC
GAATATGAGGATATAGCAAAGGAAGTGGTTCAAAATTTAGCCTTTAAGAC
CAAGGCAGATAAACCTACTATGAAAATGCTCTTGGGTAGACAGGACTATC
CATCCCCTCAGGACCAAGCTGGTTTAAAAAGGGAAGTACTGGAAGAAGAT
TCTAAGATAGCAGTGGCTGCTTGGTGAAGGCTCCCTCCTGCTGATGGTAA
CACACCTGTATTATCATTAATCAATCAAAACCTAGATGAATTGTATGAAG
AATTTATTGCTAGACTGGAATCAACACCATGCAGGATGCTTCCCTCCTTC
TGAAGGTCTCTGACATACTTATTTAAAACTAATTTTGTATGGGAAAAAAT
GCTCAATCACTCTCTGCCCGGAAATTTATTTTATACCAATCCTGAATTAA
CTTGGTATTTGTGGTAATACCTCACCTTCAATGTCAATTATCCTGTATGC
CCTTCCCCCCTTCCCTGGTTTCCTGAGCGTAAATATTTCTATATGCTTGG
CTGTAATATGGCCAAGGGTTTTAACAATTTTTTCAATGGCCCTTATTGGC
TTCTTAACACCTTTTATTAATGGCAGAGTAAATAAACCTCTCCCAAAAGG
TGTTGTTCTCGGGTTTATTTCTTCTTTTGTCAATACTCCA
TTTTTAAAGACGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGTCATGACGTATTAAGACTGTGCGTTTTT
AGTGTGAGCGTTTTGCTCTAATCTGGGTAGAAGTGAGACTCTTCAGTCCT
GCTCTGGTTGTAGGGGCCAGGGGCTTTAGTTTCTTCTTGCTCTTTTCCCC
CCTCTGTTATCTTTGCCATTTCATAGTAAATATAACATGCGTCCACATTT
TCCCCCCTGTACCCATTGTTACACAGAAGCCCAGTTTCTGACCTTCATAT
TCACTGTCTCTCCATGTTTTGTGGTGGTACCTTGCTTTGGGGTCTTAAGT
CACTGATGGATTTTCAGATCATCTCTCTCTTTTTTAATTGTTATATGGGG
ATAGCAGGGATGGTTTCCAAGCTCCCGCAGCCCCAGCTCTCAGCCCCCAG
GGCTTCTCTGTGTAGCCCTGGCTGTCCAGTACTTGTTCTGTACACCAGGC
TGGCCTCGAACTCACAGATCTGCTTGCCTCTGCCTCCCAAGTGCTGGGAT
TAAAGGCGTCCAACACTACCAGCTGGCTGGTTTCCAGCTCTTAACCCGTT
CTAGCCCATACACTGGACATGTGAGACTATTTTGATTTCATGCTCTCCCG
TTCTTCTGGCTTGTTGACTTAAACGGCAAGTGTGTGCCCTGACCGTGAGC
ACCGGGCATCATTCTTTTTTTTTCTTAAACATGTTTCTATTACTTTGTCT
CACTGTAGAGTTTCCATCTGCTGTACTCCATCCTCTCTTGACTGAAGTCG
TCTTCTTTATATAGGAACATCTTTTTAATTCGGTGTCTGGCTTTACAGGT
TTCAGAAGTTTCTGTTTCCATTTATCATTTAATGGTGGCGTTGTATTGTG
CACCCCTCCATTTCAGGTTTTTTCTATTAGGATGGACCTTGTAAACTTTC
TACTCCTCCTGGTTTTTAACGGTACCATCTTAATAATTGGGTCTCCCCAT
CGTTCTTTATGAATTAAGTTTTTTTTACTATTTTCCTCCCTCCCCCAGTG
GATTATATCTTGGGTTTTTCTACCCTCTTATAACTTAATGTGCCCCTCCT
TCCGGGGTTCCATGTTTATATTTTTAAACCCCTCCCCCATCTTTCTTCTT
TATATACTCTATGTAATCTCCTCTTTGGTTCCTGCTCTCTCCCTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_p22.g1 MSMg01no050_p22.g1 CHROMAT_FILE:
MSMg01no050_p22.g1 PHD_FILE: MSMg01no050_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:02 2005
         (433 letters)



>mm_chr15_82140949_82141785
          Length = 837

 Score =  698 bits (361), Expect = 0.0
 Identities = 418/441 (94%), Gaps = 12/441 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtcatgacgtattaagactgtgcgtttttagtgtgagcgttttgctctaatctgggta 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 aagtcatgacgtattaagactgtgcgtttttagtgtgag-gttttgctctaatctgggta 259

                                                                       
Query: 61  gaagtgagactcttcagtcctgctctggttgtaggggccaggggctttagtttcttcttg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggagtgagactcttcagtcctgctctggttgtaggggccaggggctttagtttcttcttg 319

                                                                       
Query: 121 ct-ct-tttcccccctctgttatctttgccatttcatagtaaatataacatgcgtccaca 178
           || || ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 320 ctgctctttcccccctctgttatctttgccatttcatagtaaatacaacatgcctccaca 379

                                                                       
Query: 179 tttt------cccccctgtacccattgttacacagaagcccagtttctgaccttcatatt 232
             ||      ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 380 --ttcccccccccccctgtacccattgttacacggaagcccagtttctgacctttatatt 437

                                                                       
Query: 233 cactgtctctccatgttttgtggtggtaccttgctttggggtcttaagtcactgatggat 292
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 438 cactgtctctccatgttttgtggtggtagcttgcttttgggtcttaagtcactgatggat 497

                                                                       
Query: 293 tttcagatcatctctctcttttttaattgttatatggggatagcagggatggtttccaag 352
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 tttcagatcatctctctcttttttaattgttatatggggatggcagggatggtttccaag 557

                                                                       
Query: 353 ctcccgcagccccagctctcagcccccagggcttctctgtgtagccctggctgtccagta 412
           |||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 558 ctcccgcagccccagccc-cagcccccagggtttctctgtgtagccctggctgtccagta 616

                                
Query: 413 cttgttctgtacaccaggctg 433
           ||||||||||| |||||||||
Sbjct: 617 cttgttctgtagaccaggctg 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 837
Length adjustment: 9
Effective length of query: 424
Effective length of database: 828
Effective search space:   351072
Effective search space used:   351072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)