BAC Information

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BAC

Clone NameMSMg01-051E04
Chromosome15 (Build37)
Map Location 5,466,813 - 5,467,126
singlet/doubletsinglet
Overlap genenone
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291
Downstream geneLOC666319, LOC100039358, LOC666323, Dab2, C9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051E04.T7 (MSMg01no051_e04.b1)MSMg01-051E04.TJ (MSMg01no051_e04.g1)
ACCAG280083AG280084
length1,2821,407
length of high quality
(start - end)
318 (129 - 446)200 (116 - 315)
definitionCHROMAT_FILE: MSMg01no051_e04.b1 PHD_FILE: MSMg01no051_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:41 2005CHROMAT_FILE: MSMg01no051_e04.g1 PHD_FILE: MSMg01no051_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCGATCATTGGGCGTATAGACTCCTAAGGGAGAGGATCCGCGGAATTC
TCCATTTGGAAGTCACATATAGGCATTATCTTCCTGACCTTGCTAGCAAG
CAAGGACACTGATGTGATAGAGAAACCCGAGAAGGGTATTGAATTTTGTT
CTGTGACGGATTGAACCCAAGGCCTAACATCTGCCACTAAAGCTACATCT
CCAGCTTTAGCAACAATGTGAATTTCCCCTCACATTTGATATATTTAAAC
ATTACAGCATGCATGTAAGATACACGTTCTCTTTGTATATTATAAGCACC
AATATTTTCTCTCAAATTTTGTGTGATACAAACCAAGATTATTTTTTATT
CTTCACCACATTTTGCATATGTACACACTGAACTTGGGGGGCATTTTTTT
TCCTTCTTATGTATTTCTTATCCATCACATCTTATCTTCTCTTCCTCCTA
TCTCTTGCTTCGTCTCCTGAAACCTCTTTTCTTTCCAACAAGGCCCCTCC
TACTTTGATGACATTTCCTTTCTTATCCAATGGATTTAGTTCTAGTTGCT
TGAATGGTTATGAGTGGAGGTTTCTTAACTGTAATATCTACAACTTACCC
TTGCTTATACTGACTCATAAAATCATCTTTTTCCCCCCACCACTATTATT
TGTCTGTATTTTCTCTCCTACTTCTGAAGTTCTTATCACCCTCCAACATT
TCCTTACTTATCCCGATGCTTCTATTTTTTTTTTATTCTTATTTCACTTT
TCTTCCTTTTTTCCTTTCTCTATCATTCTTTCTTATTTCTTCTTTTACTC
TCACTTTCTTTTTTCTTACTGTCTTATTTTTCCTTTTTCTTTCTCCTCTC
TATTTCTTTTTTTTTTGTTTACTTTTTCATTCCTCTTTTCTCTCTCTCTT
CCCTTTTTTTCTCTTTCTTTTTTTATTTCTTTCTTTCTTTTCTTTTCTTC
TTTTTTTTTCTTCACCAGTTTATATTATTTATTATTTTTTATTATTATTT
ATTTTTTTATTTTTATAATTATTTTCTTTTTTATATCTTCTTTTTATTTA
CTTTTTCAATTTCTTTTTTTTCCTTTTTTCCCTTTTTCTTTTTTTTCTTT
CACTACTCTTTTCTCCTTTCCTTTTTCTTTTTCCATCTCTATCCTCTCTT
CCTCGTTTGCGTATCTTTTTTATCATTTTACTCTCTTCTTTCCATATTCT
ACTTATTTATCCATTCCTCCTCACTCTTTCTATATTATTACTTATTTATT
TTCCCCCTCTTTATATATCTATTTATCTTTTG
TTTTTTTGATATGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATTTCCTCAGCTGTACCATTGAGCCATCT
ACTCTGTTCTGTAATGGATTCTATCCCCCTTTTGTTAAGTAACATCCTTG
TGTTTTAATTGTTACTTTCTGCTACTTGTAACTAAAACGTTTCTAATTTA
TGCATTATTCTAGGACTTGCAATGGTCTGAGATTTTCCCCTCCCAAAATT
TACGTTAAAGTCTAATTCCCAACGTTAATGGCCTTTGAAGGTAAAGCCTT
TTAAGGATAATTAGGGTCAGACAGTATAATCCAGCTCCTGTTCTCTGATC
TAATTGATAGTTGCAGAAGGAGGTTAGTAGGCGGATCATTTCTTTTTTTT
TTTTCTTTCATTCCATTTTTTTTTTTTTTTTTCTTCTATCATCTCCCTTC
TTTTTTTTTCCCCCCATTCTTTTTTTCTTCTTTTTACTCCAAATACATTT
TTCTTCTTTCTTTTCCTTTTTACTTTTTTTCTTTTTTTCTTCTTTTTTTT
TTTCTTTTTTTTTTTTCCATCTCTTTTTTTCTTTCTTTATTTTATTCTTT
CTTTTTTTTTACTTTTTTTTTTTTCTCTTTCATTCCTTCTTTTTTTTTTT
TTTTTCTTTTTTTTTCATTCTTTTTACTTCTTTTTTTTTTTTCACCCATA
TTTTTTCTTTTCTCCTCTTTATTTCTTTCTTCTATTTTTTCCCTCTCTTC
TTATCTTTTCTTTCTTTTTTCCTTTTATTTTTTTTTTTCCTTCTTTTTTC
TTCTTTACTTTCTTTCTATTCTTCTCCTTTTTTCTCTATTATTATTTTTC
TTCCTTTTTCCTTTTTCTTTACTTCTTTATCTCTTCTCTTATCTTTTTTT
ATTTTTTTTTTCTTATTTTTACCTTTTCTCCTTCTATACTATCTTTTTTT
TTTTTTTCTTTTCTTTATTCACTTCTTCTTTCTTTCTTCTTTTCTTTTTC
TCTTTTTTTCTTTCTCTTTTCTTCTTCTTTTTCTCATATTTCTACCCCTC
CCTTTCTTTTTTGTTTTTATTATTATTTTATTATATCTTTCTCTTCTACT
CTTTTCTTTCTTTCTTTTTTTTTTTTACTTTTTCTTTTTTCTTTCCTTAT
TTTTTTTCTCTCTTTTTTTTTCTTTTCTTACTTATTCTTTCTATCTTCAA
TTTCTCATTTTTTTCACTTCTTCTTTTTCCTATTTTCTTTCTACTCTTTC
TCATCCTTCTTTTATTTTCTTTCTTTATTCCTTCCTTTTTCTTTTTCTTT
TCATTCTTTCTTCTTCCTTCTTTTATCTTTTTATCTAATTTCGTCCTAAT
NTTCCACTCTATATTCTTATTCTTACCAACTTTCTCTTTCTTTTTGCTCC
TTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_e04.b1 MSMg01no051_e04.b1 CHROMAT_FILE:
MSMg01no051_e04.b1 PHD_FILE: MSMg01no051_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:41 2005
         (318 letters)



>mm_chr15_5466613_5467329
          Length = 717

 Score =  547 bits (283), Expect = e-160
 Identities = 307/319 (96%), Gaps = 9/319 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaagggtattgaattttgttctgtgacggattgaacccaaggcctaacatctgccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gagaagggtattgaattttgttctgtgacggattgaacccaaggcctaacatctgccact 455

                                                                       
Query: 61  aaagctacatctccagctttagcaacaatgtgaatttcccctcacatttgatatatttaa 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 454 aaagctacatctccagctttagcaacaatgtgaatttcccttcacatttgatatatttaa 395

                                                                       
Query: 121 acattacagcatgcatgtaagatacacgttctctttgtatattataagcaccaatatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 acattacagcatgcatgtaagatacacgttctctttgtatattataagcaccaatatttt 335

                                                                       
Query: 181 ctctcaaattttgtgtgatacaaaccaagattattttttattcttcaccacattttgcat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 334 ctctcaaattttgtgtgatacaaaccaagattattttttattcttcacca-attttgtat 276

                                                                       
Query: 241 atgtacacactgaacttggggggcattttttttc----cttcttatgtatttcttatcca 296
           |||||||||||||||||||||||||||||    |    ||||||||||||||||||||||
Sbjct: 275 atgtacacactgaacttggggggcatttt----cacaccttcttatgtatttcttatcca 220

                              
Query: 297 tcacatcttatcttctctt 315
           || ||||||||||||||||
Sbjct: 219 tcccatcttatcttctctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)