BAC Information

Click to search

BAC

Clone NameMSMg01-051I17
Chromosome15 (Build37)
Map Location 67,435,612 - 67,435,884
singlet/doubletsinglet
Overlap genenone
Upstream genePhf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051I17.T7 (MSMg01no051_i17.b1)MSMg01-051I17.TJ (MSMg01no051_i17.g1)
ACCAG280270AG280271
length1,2991,502
length of high quality
(start - end)
277 (137 - 413)115 (69 - 183)
definitionCHROMAT_FILE: MSMg01no051_i17.b1 PHD_FILE: MSMg01no051_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:24 2005CHROMAT_FILE: MSMg01no051_i17.g1 PHD_FILE: MSMg01no051_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATATTTTTTNTTTTACACTGGGCGCTATAGACTCCTATANGGAGAGGA
TCCGCGGAATTCTCAAAGAATTATAAAACCCTTTAAAAACCACAAAGNAG
ANACATTTTAGATATACACAGCCTTTAAAAGCCTGCACACACCCATGAAC
ACGTTCCTTCATTGTTACTTAAAAGTGCTCCAATTTAAAAACCTATGAAA
CTTTGAAGAACTACTTTCTAAATAAACCTAAGTGTCTTGGAATACTTTAG
AATCATTATTCTATGCAAGTTCTCTAAATTGTGGTATCATTTTGTTTGAA
AGTTTTAAGCAATTGAAGCTTGAATGAAAATTACAATTACTTTTTAATCA
AGGTCTGCAAATAAAGAGATGTGAAAATGCATCATGACAAAAGCACAGAA
AGACCTATATTTTTTTTTTTATAGGAGCNCAAAGGGCATGCTCTATTCCA
CTGCAAAAACTTCATATTTATTCTGAACATTTTTTTCTATTTATAATTGA
ATATAATGATATTGTCTGCTAAGATAGAATCACAGCTCAAATCTATAATT
TGGTAGCTTCCTAAATTTAGAAACATATTCTAACTACATTGCTGGTACTA
CCTAATTATTTGACATCTTCCATCTAATACATTATTCACATTACGCCTTC
TCTATCTATCTCTGATTATCAGTCTCTATTGTATAATATATGGCATTTAC
TCCTACATATTTCACTATCTTAGTATAATCCTTTTCTTTCCTTATTTATT
ATAACCTTTCTCCTTATAATATTCTCCCTTTACGCCACTCTTTTTTCTTT
TTTTTTTTACCCAACCTTCTGCTTTTTTTTTTTTTTATTTTATTATTTTC
TTTTTGTTTATACCTTTTCCCTATTTATTTTTTTTTTTTTTTTTTTTTCT
TTTCCTTCACTTGTTCTCTTTTTTCTTCTCTCTTCTTATTCTTTTTCCCT
TTTTTCTTCTCTTACTTCTCTTTTTCCTATTTTTTATCTTTTTTTCTCTT
TTCTTTTTCTTCTTTTTCCTTTTTCTTCCTTTTCTTTTTTTTTTTTTTCA
TTCTTTACTTCCTTTTTTTTTTCTTTTTTATTTTCTCTATTTTCTTACTT
TCTATTCTATCTTCTCCTTACTCCGTCTATCTTTTTTTCTATTACTTTTC
TTCCTTCTTTCTTTATTCTTTTATAACTTTTAATTTATTATTACTCATTT
CCTTTTTCCTATTTCTTTTGTTTTCTCTTGCTCTTATTCCTAATCTTTCT
CTTTACTTCTTCCTCTTTATTTTTTTTTCTTCCCTCTTAGTTATTTTCT
TTTTTTAGCATGGAGCCTGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCAATTTTTTTTTTTTTTTTTTTTTTAGAAG
ATTGTGCTTCCTTGTTTCTTTTTATGCCCCCCATGACTTGTGATTTTTAT
TTTTATTTTCTGCAGACTTAATATTGCCCCAATTATGGTTCTGCAGATCC
AAGTTTCTGCTTCTTTGGATTTGGTTGTTTTGAGGTTATTCTATTTATTT
TCTTTTTGTATTTTATTTTTCTCTCTTTTTTTGTGTATCTTTTTATTTTT
TTTTTTCTTTGTTTTTTATATTTTCTTTTTTTTTTGTATTTTTTTTTTAC
TTTTACATTTTTTATTTTTTTCTTTTTATTTTTTTTTTACTTTCCATCAC
TTTTTTTTTTTTTTTAATGCTTTCTTTTTTTCATCTTTTTTTTATGTTTT
TATTATCCCCCCCTTTTTTTTTTCTTCCTCTCCCTTTTTTTTTATTTTTT
ATTTTTTTTATATACATTATTTTTCTCTCTTTTTTTATTTTTTTTCTTTA
TTTTTATTTTTGTTTTTTTTTTCTTTCTTTTTTTTTTTTTTTTATTTTTC
CCTTCTTTTTTTTTCTTCTTCCTTCTTTTATTTTTCTCCTTTTTTTTTTC
TTTTTCTTATTTATCTTCTTTTTTTTTATTTTTCTTTTTTTTTCTTATTT
TCTTTTTACTTTCTTTTTTCTTATTATTTTCTTTTTATTCTTAATTTTTT
TTATTTTCTCCTTTTATATTTTTTTTTTTATTTTCTTTTTTCCTCTTTTA
TTTTTTTCTTCTTTCTCTTCTTATCTATTTATTATTTTTTTTATTTTTAC
TTTTTCATTCTTTTCTTTTTTTTCTATTTCTTTTTTTTTTTTTATTCGCG
CAATTAATTTTCTTTTTTTTTTTTTATATTTTTTCTTACTTTTCATAACT
TTTATTCTTATACTCTTTCTCCTATTATCTTTTTTCTTTCTTTTCTCTTT
TTATTTTTATTTATTTTCCTTTTATCTTTTTCTTTCTTTTTACTTTTTTT
TATTATTTCTTTTTTTTACTTTATTCTATTATCTCTTTCTTTTTTTTTCT
TTTCTTCTATATCTTTTATTCTTTCCTCTTTCTTTTATTTATCTTTTTTT
CATCTTTTATTTTTTTTTTCTTTTTTGTCTCTTCTTTTATCTTTTTCTCT
TCTCTCTTTTACTTTTTTCTTCTCAATTTTTCTGCTTCCATCTTTATTAT
TCCTCTTTTGTTTATATTTCCTTTACTATTTTTTTTTTATTATTTTTTNT
ATTGCTCTACTCTATTTCTTTTTCCTTTTCATGTGTATCTTTTTATCCTT
TTTTTCCTTCTTTCTTTCTCTCATTCTACCTTTCTCTTCCTTTATTTTAT
TCTTATTTTTTCTTTATTTCGACTCTTTCTTGTATCCATCTATTATACTC
TTCTCACTACTTCCTCTCATTTTTCTATTAACTCTTTATTATTTATATTC
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_i17.b1 MSMg01no051_i17.b1 CHROMAT_FILE:
MSMg01no051_i17.b1 PHD_FILE: MSMg01no051_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:24 2005
         (277 letters)



>mm_chr15_67435412_67436088
          Length = 677

 Score =  482 bits (249), Expect = e-140
 Identities = 267/277 (96%), Gaps = 8/277 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacacccatgaacacgttccttcattgttacttaaaagtgctccaatttaaaaacctat 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacacacatgaacacgttccttcattgttacttaaaagtgctccaatttaaaaacctat 260

                                                                       
Query: 61  gaaactttgaagaactactttctaaataaacctaagtgtcttggaatactttagaatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaactttgaagaactactttctaaataaacctaagtgtcttggaatactttagaatcat 320

                                                                       
Query: 121 tattctatgcaagttctctaaattgtggtatcattttgtttgaaagttttaagcaattga 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tattctatgcaagttctctaaattgtggtatcgttttgtttgaaagttttaagcaattga 380

                                                                       
Query: 181 agcttgaatgaaaattacaattacttttt----aatcaaggtctgcaaataaagagatgt 236
           |||||||||||||||||||||||||        |||||||||||||||||||||||||||
Sbjct: 381 agcttgaatgaaaattacaattact----gaaaaatcaaggtctgcaaataaagagatgt 436

                                                
Query: 237 gaaaatgcatcatgacaaaagcacagaaagacctata 273
           |||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaaaatgcatcatgacaaaagcacagaaagacctata 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)