Query= MSMg01no052_h22.b1 MSMg01no052_h22.b1 CHROMAT_FILE:
MSMg01no052_h22.b1 PHD_FILE: MSMg01no052_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:08 2005
(475 letters)
>mm_chr15_89235511_89236390
Length = 880
Score = 851 bits (440), Expect = 0.0
Identities = 468/480 (97%), Gaps = 5/480 (1%)
Strand = Plus / Minus
Query: 1 aatcttgggatacagtatttagcatttgaatacatagtagtaccagaccaaccccaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aatcttgggatacagtatttagcatttgaatacatagtagtaccagaccaaccccaacac 680
Query: 61 acctttcctcaagctcctataccctac-----tcccccacttcagtctcctcagccctcg 115
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 679 acctttcctcaagctcctataccctaccgtcgtcccccacttcagtctcctcagccctcg 620
Query: 116 ttcctcctcttactctccctacctctcatcccctaagacctcttcctgtagtctcttagc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttcctcctcttactctccctacctctcatcccctaagacctcttcctgtagtctcttagc 560
Query: 176 ccagaccttaaaatccctgccatcattcccctctctacacaccctaagcacctgaatgcc 235
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 559 ccagaccttaaaatccctgccatcattcccctctctgcacaccctaagcacctgcatgcc 500
Query: 236 ctagacttatcccatatgccctgggcctcactcaccaatctcaatacatgaattctaacc 295
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 499 ctagacttatcccatatgccctgggcctcactcaccaatatcaatacgtgaattctaacc 440
Query: 296 ctgagacactcttcacccacctcggctctcgcactctctccctggatctacttcccaact 355
|||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctgagatattcttcacccacctcagctctcgcactctctccctggatctacttcccaact 380
Query: 356 tcatcagtttctgcaaagtcacgtggccacagcccctatccttctacctgcttcatgctc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcatcagtttctgcaaagtcacgtggccacagcccctatccttctacctgcttcatgctc 320
Query: 416 tgtgcctcggtttatctgatcctctggttatagaaatatgtgctgttgcctcatttcccc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtgcctcggtttatctgatcctctggttatagaaatatgtgctgttgcctcatttcccc 260
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 880
Length adjustment: 10
Effective length of query: 465
Effective length of database: 870
Effective search space: 404550
Effective search space used: 404550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_h22.g1 MSMg01no052_h22.g1 CHROMAT_FILE:
MSMg01no052_h22.g1 PHD_FILE: MSMg01no052_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:08 2005
(250 letters)
>mm_chr15_89073394_89074042
Length = 649
Score = 458 bits (237), Expect = e-133
Identities = 246/249 (98%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 1 cagttacctgcctctgcatgggccaccaccacacttgtaattgataaattcgtaaaaagt 60
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cagtgacctgcctctgcatgggccaccaccacacttgtaattgataaatt-gtaaaaagt 259
Query: 61 taaaatacaaaaaagtaagagctgatttgtggctgggtcaatgatcagttgcagtttaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaaatacaaaaaagtaagagctgatttgtggctgggtcaatgatcagttgcagtttaga 319
Query: 121 ttctaattctctcttggcaacagtctctaccacagagtgttctgttggaccctttcatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttctaattctctcttggcaacagtctctaccacagagtgttctgttggaccctttcatgg 379
Query: 181 aactgtagcatcatatgggcgacacttgtgtttgaatcctatcctctgtcttccgattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 380 aactgtagcatcatatgggcgacacttgtgtttgaatcctatcctctgtcttccggttct 439
Query: 241 gtcaccctg 249
|||||||||
Sbjct: 440 gtcaccctg 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 649
Length adjustment: 9
Effective length of query: 241
Effective length of database: 640
Effective search space: 154240
Effective search space used: 154240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
