BAC Information

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BAC

Clone NameMSMg01-053F24
Chromosome15 (Build37)
Map Location 50,769,141 - 50,769,776
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053F24.T7 (MSMg01no053_f24.b1)MSMg01-053F24.TJ (MSMg01no053_f24.g1)
ACCAG281607AG281608
length724820
length of high quality
(start - end)
647 (39 - 685)---
definitionCHROMAT_FILE: MSMg01no053_f24.b1 PHD_FILE: MSMg01no053_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:16 2005CHROMAT_FILE: MSMg01no053_f24.g1 PHD_FILE: MSMg01no053_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGATCCGCGGAATTC
AGGAATATTTGACAAAGTTTTGTATGGAGGAGAAAGTCTAGTTTTGAAGC
CTGGATTCTGTGTGATTGATCAACACTGGCACAAAGTTTTCTTCAATTTG
TAGAGAAAAGTTCTTACTGCCAAATCTCAGACGTGGAAAGTAGAATCTGT
ATAATCTTTATTCAGTCCAGTGTGAGGACATCTTAGTCAAAGACTCAAGC
ACAAGCAGAAGTCAGCTTTGCATTGGTCAATTTTAAATGTTAAAAATATA
GCAAAATAAATTTTCTTATCCAAAGTTTGCCTTTTACAATTTGGTCTTCG
AGTTTGATATAGCATGGAGATTTTTTTCGCCCTCTGAGAAAAGTAACTGA
GTACATAATTTTTTTTCCTAGTAGGAGATAATAACTTTCCACCTAAATTT
ATTAATAGGACTAGTAAAAATTGTCCAAGCACAAAGAAACTACAGAAAGG
ATGAAAAATTAAGTTAGCGCCAATCACCAATCCTGGCCCATCTCACACCT
ATATTGAAACAGAGAAATTATCCCCCTTTTCTTTTCTTCACTAAACTTCA
TTTGAATCATTTTATTCATTCCTTCCACTTTACATTATTTCCTGGCTCCT
CCCAGCACCCTTGGTGAATGCAACAGAGGGTTACTTACCTGCAGTCCCAC
ATCTCTTTATATATTAAAGAGCAC
AGCGCCCGGGAGTGCGGGGGAAGAGGGGGTCAAAAAAGGGGGGNTGNGGG
AATTTTTCCGCAAAAGGGGATGAATACACCTTTAGATCCTCACCCCGTGG
TCTTTGGCCCTCCCCCCTTTTTGCTTGTTCCCCTTGCTCCTCCCCTATCT
CCAAGAATCGCATTCGCCCCCCGGGTAATACATATAGCAGCCACCGATTG
AGCGAATGCGGCTTCAAAGGATGCTGATCGCGGATTGAACGGAGCGGAAA
CAGCCACAAACCGTAAATTATACCGCCACATCGGACCAATAATAAGTGTG
GCAGCGCGAATTATTACCGACCGCGTATTTTATATAACACACAACATACA
ACCCCGCAAGAGAATTTTATGAGGTTAATCCCCGAAATCACCACGACCGA
AGATAAAGACACACAAAAACCACACATATATAACCCACAGTGGTGTACGG
TATCGGGATTAGTTCATAGTACGAAAGATAACGGACTATATGTGTATTTG
CACGCAAACTATAGCGATTACCTGCTGCAGTATAGACCACGCTAATGCCA
TACCGAGTTCGTACACTGTCACGGTGTGAGATAGCGCGTCCATAGAACAT
CGCAAACCCGCTATTCTTATGGAACACCTGGACGGTGAAATCGGCGCCGT
ACCCATTAATGGACGGGCCCCCGGACCGCCTATTATAAAATCCCGCTCTG
ATACCGCTGTGTAACGCTCCCCGAATACCCCGTTATTCAAACCCCGCGCC
GCCCGATAATGGCCAGCGCCCGCCCTCCTACTCGCGCCACCCGCTATCTC
CCCTCTTGTTCGAGACGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_f24.b1 MSMg01no053_f24.b1 CHROMAT_FILE:
MSMg01no053_f24.b1 PHD_FILE: MSMg01no053_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:16 2005
         (647 letters)



>mm_chr15_50768935_50769981
          Length = 1047

 Score = 1191 bits (616), Expect = 0.0
 Identities = 631/636 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaggaatatttgacaaagttttgtatggaggagaaagtctagttttgaagcctgg 66
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaggaatatttgaaaaagttgtgtatggaggagaaagtctagttttgaagcctgg 266

                                                                       
Query: 67  attctgtgtgattgatcaacactggcacaaagttttcttcaatttgtagagaaaagttct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attctgtgtgattgatcaacactggcacaaagttttcttcaatttgtagagaaaagttct 326

                                                                       
Query: 127 tactgccaaatctcagacgtggaaagtagaatctgtataatctttattcagtccagtgtg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tactgccaaatctcagacgtggaaagtagaatctgtataatctttattcagtccagtgtg 386

                                                                       
Query: 187 aggacatcttagtcaaagactcaagcacaagcagaagtcagctttgcattggtcaatttt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggacatcttagtcaaagactcaagcacaagcagaagtcagctttgcattggtcaatttt 446

                                                                       
Query: 247 aaatgttaaaaatatagcaaaataaattttcttatccaaagtttgccttttacaatttgg 306
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 447 aaatgttaaaaatatagcaaaatagattttcttatccaaagtttgccttttacaatttgg 506

                                                                       
Query: 307 tcttcgagtttgatatagcatggagatttttttcgccctctgagaaaagtaactgagtac 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcttcgagtttgatatagcatggagatttttttcgccctctgagaaaagtaactgagtac 566

                                                                       
Query: 367 ataattttttttcctagtaggagataataactttccacctaaatttattaataggactag 426
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 567 ataattttttttcctagtaggaaataataactttccacctaaatttattaataggactag 626

                                                                       
Query: 427 taaaaattgtccaagcacaaagaaactacagaaaggatgaaaaattaagttagcgccaat 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 taaaaattgtccaagcacaaagaaactacagaaaggatgaaaaattaagttagcgccaat 686

                                                                       
Query: 487 caccaatcctggcccatctcacacctatattgaaacagagaaattatcccccttttcttt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 caccaatcctggcccatctcacacctatattgaaacagagaaattatcccccttttcttt 746

                                                                       
Query: 547 tcttcactaaacttcatttgaatcattttattcattccttccactttacattatttcctg 606
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 747 tcttcactaaacttcatttgaatcatcttattcattccttccactttacattatttcctg 806

                                               
Query: 607 gctcctcccagcacccttggtgaatgcaacagaggg 642
           ||||||||||||||||||||||||||||||||||||
Sbjct: 807 gctcctcccagcacccttggtgaatgcaacagaggg 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)