BAC Information

Click to search

BAC

Clone NameMSMg01-053H03
Chromosome15 (Build37)
Map Location 92,425,665 - 92,425,908
singlet/doubletsinglet
Overlap genePdzrn4
Upstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053H03.T7 (MSMg01no053_h03.b1)MSMg01-053H03.TJ (MSMg01no053_h03.g1)
ACCAG281659AG281660
length731713
length of high quality
(start - end)
257 (44 - 300)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no053_h03.b1 PHD_FILE: MSMg01no053_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:21 2005CHROMAT_FILE: MSMg01no053_h03.g1 PHD_FILE: MSMg01no053_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTCCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCA
AATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAATGGATTACATTGATAGATTTTCATATATTAAACCATC
CCTGCATCCCTGGAATAAAACCTACTTGTTCAGGATGGATGATTGCTTTA
ATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATC
GATATTCATAAGAGAACTTGTTCTCTAAGTTCCCTATCTTTTGTTGGATC
TTCCTGTGCCCTCACCACCCTATTTATCCTGTCCTCTTATTTTTACTCGC
TTTTTGTACTTTTTTTCTCTATCTCGCCAATTATTCTGTGCCCCCTTTTC
TTTTCTTTTTCCTCCCACTGTCCTTTTTCCCCCTTTTCCCCATTCCTTCT
TTTAATGCACATCCTTTTTTTATTTCCTTTCCCCCCTCACTTTTTTTTAC
CTTTTCCACCCCTCTTTCCCCCTTTTTTTATTTCCCATCTTTTTCCCTTT
ATTCCTGCCCTTCTCCACCCCCCCTTTACCTCCCCTTTCTACCTCATTCT
CTACCCCCTTCTCCTCCTTTTTCTACTCTACCCCTTATTTCCCCTTCCCT
TTACTTTCCCTTAATCCCTTCGTTCTCCCCA
TACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATGAAAATCAATGGCCACAAAC
AGAAGTTTTCTAAGTATAGAAGGATTGGTATCTTGGATGTTATCAGGTGT
GAAGATGTTAGAGCTTACATCTTTCAAGCACACACTGATTGCATTTGGCA
GTTCCTAGGCTGAGTTGTAAGTGCATGATGGAGTCTTAGGCATTGATATT
CTGCAGGTAATTCTCTGGTTCTAGGATATAGAGTACAATACGGCAAGGAT
GGCTAGTTTATTTATCTCTGGCTGTTTGTTGCCAGCGCTGACTAAACTGC
TTCGTGGAAGGTTTTGAAAGCTGGATAAGGAACTAACTTATTTGTTATTC
ACTTGTAGCTCTTACCATGTCTTAGAGTTGATTTTTAATACCATTAATAT
CTCTTGTTTTAACAACGTCTTCTTCTTTATCTCATTTAGTGAGTCCTTTC
TTCGATCGTTGATCCTTCCCTCTGAAGCCGCCTGTCCCGTTCTGCAATTG
CTCCCGCCCCCTGTGTTCCACCCTTTTCTAGGCCCCCTGTTTTTTCTGTT
ACCCCTCTTTTCCCTTCCGCGTTTCCACCCTTTCTTCCTTATTTGTTTGT
CCCCGTTTTACCCCCTTCGCCACGACTACACCCCCTGTTCCTACCTTTTT
CTACCCCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_h03.g1 MSMg01no053_h03.g1 CHROMAT_FILE:
MSMg01no053_h03.g1 PHD_FILE: MSMg01no053_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:21 2005
         (245 letters)



>mm_chr15_92425465_92426109
          Length = 645

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgaaaatcaatggccacaaacagaagttttctaagtatagaaggattggtatcttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatgaaaatcaatggccacaaacagaagttttctaagtatagaaggattggtatcttgga 385

                                                                       
Query: 61  tgttatcaggtgtgaagatgttagagcttacatctttcaagcacacactgattgcatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgttatcaggtgtgaagatgttagagcttacatctttcaagcacacactgattgcatttg 325

                                                                       
Query: 121 gcagttcctaggctgagttgtaagtgcatgatggagtcttaggcattgatattctgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcagttcctaggctgagttgtaagtgcatgatggagtcttaggcattgatattctgcagg 265

                                                                       
Query: 181 taattctctggttctaggatatagagtacaatacggcaaggatggctagtttatttatct 240
           ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaatctctgggtcaaggatatagagtacaatacggcaaggatggctagtttatttatct 205

               
Query: 241 ctgg 244
           ||||
Sbjct: 204 ctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)