BAC Information

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BAC

Clone NameMSMg01-054G16
Chromosome15 (Build37)
Map Location 56,619,071 - 56,619,554
singlet/doubletsinglet
Overlap genenone
Upstream geneSntb1, LOC665348, LOC100039908, Hba-ps3, Has2, EG594843, LOC435442
Downstream geneLOC100040067, LOC100039984, BC026439, Zhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054G16.T7 (MSMg01no054_g16.b1)MSMg01-054G16.TJ (MSMg01no054_g16.g1)
ACCAG282357AG282358
length680709
length of high quality
(start - end)
323 (19 - 341)485 (75 - 559)
definitionCHROMAT_FILE: MSMg01no054_g16.b1 PHD_FILE: MSMg01no054_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:36 2005CHROMAT_FILE: MSMg01no054_g16.g1 PHD_FILE: MSMg01no054_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCCTATTCCAAGAGGATCCGCGGAATTCTCACCTTACGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCCATTCCTCAGAAAATTGGACATAGTACTATTGGAG
GATCCAGAAATACCTCTCCTGGTCATATATCCAGAAGATGTTCCAACTGT
TAAGAAGGACACATGCTCCACTGTGTTTTTAGCAGCCTTACCCATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATTTACACAATGGATTACTACTCCGCTATTAAAAGAAT
GAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAAGGCTTCATCCT
GAGTGAGGTAACTCAATCACAACAGAACTCACATGATATGTACTTCTTTG
ATTGGCGGATATTAGCCCCCTATACTTATAATACCCATGATATAAGAATA
CATTTGGCGAACCCATGAAGCTCAGTAAGG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGACTAGGTGGGCCTTGAA
CTCAGAGAGCTGCCTCCCGACAGCTGATATTAAAGGACACTGAAGGGCAG
GAGAATGATTATGAATCTCATGCCTAGATTGTAGTCAGTCACCTCTAAGC
TAGAGGCAAGGCTGCTTACAGAGGTTATGGATGTGATAAATAAAGGCCAG
GGAGGGAGCTTAAGTAATAAACACCTCACATTATTATGGCACTGCTGATG
GTGGGCCACTGTGAACCAGGAGTGACGTTATGAGGCATCCAAACCTCAGT
AGGGAGTACCTTCAACTTCCAAGTGTGGGTATAACCTGCTTTCTGTAACT
GATACATACTTCCACCCCCCCCATGTAGCAAATCTTTGCCACTCAAGATA
AATCATACTTTGATATGTTTTATGACTTTAATATTATAAACATATCTAGC
CCATCCTTAAATGTTGGACGGGACTTGGAGTCTTGAAGGAGGGAGCTGTT
TACATGTGGTGTGTGGCCACCTTCACAGACTCAGGGTGGGAAGCCAACAC
TCAGGGTCACCTATTTAAGCCTCCATACAAAGGGCACTTCCAAGATCATT
GATTTGATCACTCCCCTGTTATTTCACTGGTTTTCAAAGATATTGTAAGT
AATTTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_g16.g1 MSMg01no054_g16.g1 CHROMAT_FILE:
MSMg01no054_g16.g1 PHD_FILE: MSMg01no054_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:36 2005
         (485 letters)



>mm_chr15_56618871_56619754
          Length = 884

 Score =  895 bits (463), Expect = 0.0
 Identities = 479/489 (97%), Gaps = 9/489 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtagactaggtgggccttgaactcagagagctgcctcccgacagctgatattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtagactaggtgggccttgaactcagagagctgcctcccgacagctgatattaaa 260

                                                                       
Query: 61  ggacactgaagggcaggagaatgattatgaatctcatgcctagattgtagtcagtcacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacactgaagggcaggagaatgattatgaatctcatgcctagattgtagtcagtcacct 320

                                                                       
Query: 121 ctaagctagaggcaaggctgcttacagaggttatggatgtgataaataaaggccagggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaagctagaggcaaggctgcttacagaggttatggatgtgataaataaaggccagggag 380

                                                                       
Query: 181 ggagcttaagtaataaacacctcacattattatggcactgctgatggtgggccactgtga 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagcttaagtaataaacaccttacattattatggcactgctgatggtgggccactgtga 440

                                                                       
Query: 241 accaggagtgacgttatgaggcatccaaacctcagtagggagtaccttcaacttccaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaggagtgacgttatgaggcatccaaacctcagtagggagtaccttcaacttccaagt 500

                                                                       
Query: 301 gtgggtataacctgctttctgtaactgatacatacttcca----ccccccccatgtagca 356
           ||||||||||||||||||||||||||||||||||||||||    |||     ||||||||
Sbjct: 501 gtgggtataacctgctttctgtaactgatacatacttccattgtccc-----atgtagca 555

                                                                       
Query: 357 aatctttgccactcaagataaatcatactttgatatgttttatgactttaatattataaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aatctttgccactcaagataaatcatactttgatatgttttatgactttaatattataaa 615

                                                                       
Query: 417 catatctagcccatccttaaatgttggacgggacttggagtcttgaaggagggagctgtt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catatctagcccatccttaaatgttggacgggacttggagtcttgaaggagggagctgtt 675

                    
Query: 477 tacatgtgg 485
           |||||||||
Sbjct: 676 tacatgtgg 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space:   415150
Effective search space used:   415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)