BAC Information

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BAC

Clone NameMSMg01-054H18
Chromosome15 (Build37)
Map Location 27,631,687 - 27,780,717
singlet/doubletdoublet
Overlap geneTrio
Upstream geneFbxl7, LOC622531, LOC625311, Ank, BC087945, LOC100040622, BC052328
Downstream geneLOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054H18.T7 (MSMg01no054_h18.b1)MSMg01-054H18.TJ (MSMg01no054_h18.g1)
ACCAG282408AG282409
length688693
length of high quality
(start - end)
174 (37 - 210)512 (74 - 585)
definitionCHROMAT_FILE: MSMg01no054_h18.b1 PHD_FILE: MSMg01no054_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:41 2005CHROMAT_FILE: MSMg01no054_h18.g1 PHD_FILE: MSMg01no054_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,631,687 - 27,631,856)(27,780,206 - 27,780,717)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTC
TTTCCCTGTGTGCTCTCTGCACATGGGATACTCCGTGCTTTCTGCATATG
GGATACTCTGTGCTTTCTGCATGTGGACACTGTCTGTGTGCTCTTTGCAT
GTGTACACTGTCTGTGTGCTTTCTGCATGTGGGAAACTGTGTCTGTGTGC
CCTCTGCATGTGGGGCACTGTGTCTGTGTGCTCTCTGCATGTAAGGCACT
GTGTCTGTGTGCCCTCTGCATGTGGTACACTCTATCTGTGTGCTCTCTGC
ATGTGTTACACTGTGTCTGTGTGCTCTCTGAATGTGAGACATTGTGTCTG
TGTGCCCTCTGCATGTGGAACATTGTGTCTGTGTGCTCTCTGCATGTGGT
ACACTCCTATCTGTGTGCTCTCTGCATGTGCCACACTGTGCCTGTGTGCA
TGCTGCACGGAGAACACTATTCCCCTGGGGTGTATCATCTGTGTCTGCAT
AGCAGAGGAGCTTGATCTTACAGCCAATTGGTTGTGAGGGAACCCCGATT
ACTCTCACTATAAAACATATAATAATGATGAATGAGCGCAGGCTAGCTCA
TCTTGTGACAAGCTAGCTTATTTTGTGATAAGAAACTAATGTTTCCTTGC
AGAGGTGAATGTCACCCTGAAATGTCAACAAGAAACAN
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGACCGGTTGGCCTCGGGGAGAATTT
ACCATGTCCTGCTGTGTCCCGTTGTTCTTGCCCTTGGACAGCATCTCATG
GTAGAAATGGAGCCCACCCCTCCGTGGATGGCCAGCTGGCGTGGAAGAGC
TGCCCGCTCAGCAGCCATAGCTCTTGAGCGTGTTGTCCCTGCCTATCCTT
TCCTACTTGGTGGTCCCTTGCTTAAAGCATATTACTTCCTAGGCTAAGGA
AATGCATGATTTTCCCCCTAAATGTTTATTAATCTGGACATATCTGCAGA
CTGCTAGTCTAGGCTTTTCTTGAGTTAGCTGCATACTATATAGAATGTCA
CATTTAGGGCAAACCTGAGACAAATGGATTCAATACCACTAGAGTCAAAT
ATAGATATCACACTGTGTCCCGTGGTGGGGATAAAGGAGCGCTCCCTGAT
GGAGGGTCTAGATGGAGGAGTGAGGCTGTTAGATTCTGTCCATTGCACAG
AAAGCCAGCCCTGGCCTTGTTGAAGGAAGTGCCAGGAGCCTCAGCCACGG
CCTGCTGTGGTGCAGACACAGGCTGTGTTCACTGAACAGCACATGCTCCT
GGCACCACAGGTGATGGTGGATCAGGGGGCTGCTATTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_h18.b1 MSMg01no054_h18.b1 CHROMAT_FILE:
MSMg01no054_h18.b1 PHD_FILE: MSMg01no054_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:41 2005
         (174 letters)



>mm_chr15_27631483_27632056
          Length = 574

 Score =  298 bits (154), Expect = 1e-85
 Identities = 166/170 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctttccctgtgtgctctctgcacatgggatactccgtgctttctgcatatg 64
           |||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattcactctttgtctgtgtgctctctgcacatgggatactccatgctttctgcatatg 264

                                                                       
Query: 65  ggatactctgtgctttctgcatgtggacactgtctgtgtgctctttgcatgtgtacactg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 ggatactctgtgctttctgcatgtggacactgtctgtgtgctctttgcatgtggacactg 324

                                                             
Query: 125 tctgtgtgctttctgcatgtgggaaactgtgtctgtgtgccctctgcatg 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgtgtgctttctgcatgtgggaaactgtgtctgtgtgccctctgcatg 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no054_h18.g1 MSMg01no054_h18.g1 CHROMAT_FILE:
MSMg01no054_h18.g1 PHD_FILE: MSMg01no054_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:41 2005
         (512 letters)



>mm_chr15_27780006_27780917
          Length = 912

 Score =  905 bits (468), Expect = 0.0
 Identities = 501/512 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaccggttggcctcggggagaatttaccatgtcctgctgtgtcccgttgttcttgccc 60
           |||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||
Sbjct: 712 ttgaccggttggcctcggggagaatttaccatgtcccgctgtgtaaggttgttcttgccc 653

                                                                       
Query: 61  ttggacagcatctcatggtagaaatggagcccacccctccgtggatggccagctggcgtg 120
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 652 ttggacagcatctcatggtagaaatgaagcccacccctccgtggatggccagctggagtg 593

                                                                       
Query: 121 gaagagctgcccgctcagcagccatagctcttgagcgtgttgtccctgcctatcctttcc 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 592 gaagagctgcccgctcagcagccatagctcttgagtgtgttgtccctgcctatcctttcc 533

                                                                       
Query: 181 tacttggtggtcccttgcttaaagcatattacttcctaggctaaggaaatgcatgatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tacttggtggtcccttgcttaaagcatattacttcctaggctaaggaaatgcatgatttt 473

                                                                       
Query: 241 ccccctaaatgtttattaatctggacatatctgcagactgctagtctaggcttttcttga 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 472 ccccctaaatgtttattaatctggacatatctgcagactgcaagtctaggcttttcttga 413

                                                                       
Query: 301 gttagctgcatactatatagaatgtcacatttagggcaaacctgagacaaatggattcaa 360
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 412 gttagctgcatactatatagaatgtcacatttagggcgaagctgagacaaatggattcaa 353

                                                                       
Query: 361 taccactagagtcaaatatagatatcacactgtgtcccgtggtggggataaaggagcgct 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 taccactagagtcaagtatagatatcacactgtgtcccgtggtggggataaaggagcgct 293

                                                                       
Query: 421 ccctgatggagggtctagatggaggagtgaggctgttagattctgtccattgcacagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ccctgatggagggtctagatggaggagtgaggctgttagattctgtccattgcacagaaa 233

                                           
Query: 481 gccagccctggccttgttgaaggaagtgccag 512
           ||||||||||||||||||||||||||||||||
Sbjct: 232 gccagccctggccttgttgaaggaagtgccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)