Query= MSMg01no055_d13.b1 MSMg01no055_d13.b1 CHROMAT_FILE:
MSMg01no055_d13.b1 PHD_FILE: MSMg01no055_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:35 2005
(653 letters)
>mm_chr15_26323924_26324975
Length = 1052
Score = 781 bits (404), Expect = 0.0
Identities = 438/450 (97%), Gaps = 3/450 (0%)
Strand = Plus / Plus
Query: 204 tttgaaatgcactccttgttgtcaaatatttatcaggctgaaatttcttgggcacacaac 263
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tttgaaatgtacttcttgttgtcaaatatttatcaggctgaaatttcttgggcacacaac 463
Query: 264 tcagagttacactcaccaatgtgttcacacttcattatagagcatcaaaatgaaaaatac 323
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 464 tcagagttacactcaccaatgtattcacacttcattatagagcatcaaaatgaaaaatac 523
Query: 324 aattcagtgtttggttgactgtattagacatatatttacattttaaagagccaagataat 383
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aattcagtgtttgattgactgtattagacatatatttacattttaaagagccaagataat 583
Query: 384 ccttttgtctggccttttaatttagattagcattcactatacaggtgatattgctttaat 443
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ccttttgtctggctttttaatttagattagcattcactatacaggtgatattgctttaat 643
Query: 444 ttgttatttttttaccacgtgtaaaaggtaaaaatagggccagcaagatggttcagtgag 503
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttgttatttttt-accacgtgtaaaaggtaaaaatagggccagcaagatggttcagtgag 702
Query: 504 taaatgtgcttgtgatacaagcctgacgacttcatttggacactctgaccctaagtaaaa 563
||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||
Sbjct: 703 taaatgtgcttgtgatacaagcctgactactttatttggacattctgaccccaagtaaaa 762
Query: 564 tgccagacagtgtgctgtggcagcttgtgccagtaaagacagcagtcctgtgggaagttg 623
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tgccaga--gtgtgctgtggcagcttgtgccagtaaagacagcagtcctgtgggaagttg 820
Query: 624 aagaggagacagacaaatctccttatagct 653
||||||||||||||||||||||||||||||
Sbjct: 821 aagaggagacagacaaatctccttatagct 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space: 670006
Effective search space used: 670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_d13.g1 MSMg01no055_d13.g1 CHROMAT_FILE:
MSMg01no055_d13.g1 PHD_FILE: MSMg01no055_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:35 2005
(601 letters)
>mm_chr15_26370131_26371129
Length = 999
Score = 1064 bits (550), Expect = 0.0
Identities = 589/602 (97%), Gaps = 4/602 (0%)
Strand = Plus / Minus
Query: 1 agatgtggaactttttagagtttggagtaaggtgataaatctgaatatgaaaagttagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agatgtggaactttttagagtttggagtaaggtgataaatctgaatatgaaaagttagta 740
Query: 61 tggaagttgtcttggggggggggctctgtatctttgatgaaaaaaaatcattatagaatc 120
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 739 tggaagttgtctttgggggggggctctgtatctttgatg-aaaaaaatcattatagaaac 681
Query: 121 cttaataaaataagctactgggctctaacccagaaacactgatgcagagtctctatgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttaataaaataagctactgggctctaacccagaaacactgatgcagagtctctatgttc 621
Query: 181 tctggcatctgtctgtagaccaggatgaaccaactcagtctctcaaatgtgctgttaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctggcatctgtctgtagaccaggatgaaccaactcagtctctcaaatgtgctgttaaag 561
Query: 241 tttttatgccatcaaagcaaaattactgcatgattctctccttcctccaggaaatccctt 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 560 tttttatgccatcaaagcaaaattgctgcatgattctctccttcctccaggaaatccctt 501
Query: 301 tgtagaagatgcgtgctgagcatgtcatcgtttccatacacaggaaggaggcttactttg 360
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 tgtagaggacgcgtgctgagcatgtcatcgtttgcatacacaggaaggaggcttactttg 441
Query: 361 agcacatgctctgttgctgtcaaactgggtttcttggtctggctacccaatgagcagagc 420
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 agcacatgttctgttgctgtcaaactggttttcttggtctggctacccaatgagcagagc 381
Query: 421 agttggcagtccctactctata-gtgggtactgtccaaagatgggggtcacctaaaagga 479
|||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 380 agttggcagtccctactc-a-aggtgggtactgtccaaagatgggggtcacctaaaagga 323
Query: 480 agggtaaaaatgactgaaaggaagccatcacatagtactccaaatgtagcatttttagtc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agggtaaaaatgactgaaaggaagccatcacatagtactccaaatgtagcatttttagtc 263
Query: 540 tcaaataaagtttttcacctttgagagtaaaactagagtctattctattatctccagaat 599
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcaaataaagcttttcacctttgagagtaaaactagagtctattctattatctccagaat 203
Query: 600 tg 601
||
Sbjct: 202 tg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 999
Length adjustment: 10
Effective length of query: 591
Effective length of database: 989
Effective search space: 584499
Effective search space used: 584499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
