BAC Information

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BAC

Clone NameMSMg01-057A23
Chromosome15 (Build37)
Map Location 17,706,087 - 17,706,335
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh9
Downstream geneLOC100040162, LOC666835, LOC666839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057A23.T7 (MSMg01no057_a23.b1)MSMg01-057A23.TJ (MSMg01no057_a23.g1)
ACCAG284312AG284313
length695708
length of high quality
(start - end)
250 (376 - 625)323 (75 - 397)
definitionCHROMAT_FILE: MSMg01no057_a23.b1 PHD_FILE: MSMg01no057_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:53 2005CHROMAT_FILE: MSMg01no057_a23.g1 PHD_FILE: MSMg01no057_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAATATTTGCGGCGCTAAACGACTCCTANAGTCCGNACCGGCGCGGAA
NTCCTCCCTTTTTTCAGNCACCAGCAGGANTCATGACCAAATTTATGTCC
ATCCTGTCTTTCATTTCATAGTCCCTAATTTAGTTCAGTAAAATGGTGTT
AGGTTGAAATGTTTTGCTTTTCAGTAGTGAACTAACCCCCTTATTTGTTC
CCTGCTGGGAAATCAGCCATCAGGGGAATTGGCACACCTCTGTTATTATT
ATTTTTCTTTCAGGTTGGAGACTTCTCATTTGCCCCAGTGAGAACTTGAT
TATGTCTTGGAATAGAGTTTTTCGATTCATTTTGCCAGGNAACCTTTGGC
CTTCTTGCGTCTGGATATTCCTCGCCTCTGATGGTTGAGAAAAGTTCTGT
TGTTATTTGTTTGAATGGCCTTTCTACCACTTCAGCATGCTGAAATCCTT
CTTGAATACCAATAGTCCAAATATATATGTATATTTTTGCTTTTAATAGT
GACTTAAAATCCCTGTAAGCTTTCTTTTAACTCTTCTCTTTAAGGTTTCG
AAGAGCCTGTATTTAAACTGGTTTGCTTACTTATTAGTTCCTCTATCCTG
ATATGTGTTACTTTTATTATATTTTCATTTCAGTGAATATACATCAGTTT
CATGAATATGTATTTGATATTTCATTTTAAGTTTATTATTCAGTG
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCTCTGTTACTCTTCAATTATTTT
TCTAAGGCAAAACCACTTGTTTATCCAAGATCACCACAGCAGCTGCCTGG
CCTAGATGGACAGGGAGCTATACAGATTGATCTGTCTCTAGGCTAGTGCT
GTGTTTGAAGGTTAAAGACTTGAGCCATACTACCTTGGTTTGAAGTAGGT
TATGGCATTCCAAACTCAGGTCTTCCTGCTATTGTGGCTGGCACTTTATC
AATAGAATGATCCCTCTAGCTCCAAAGTAGAATTAACTAACCAGTACCCC
CAGAGCTCCTATCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCAGC
CATCAGTGGAAGACAGGCCCCTTGGTCATGCAAACTTTATCTGCCTCAGT
ACAGGGGAACGCCAGGGTCAAGAAGTGTTAGTGGGTGGTTAGGGGAATTG
GGGGCGAGGTCATCTTCTTCCCTCTCTCCTGCGTCCCTCTCCTTTTTTTC
CTTTCCCCCTTCTTCCTTTCCTTTTTCCTCCCGCCGACCCATCCCCCCTT
TCTTCTTTCTTTACTTCCCCCTGTCTCTTTTTCCCCTTTTTCCCCTATTC
CCACCTAACCATTTCCGTTTCATCCCTTTTTACACCAGCCCTTATCTCCA
TTTTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_a23.b1 MSMg01no057_a23.b1 CHROMAT_FILE:
MSMg01no057_a23.b1 PHD_FILE: MSMg01no057_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:53 2005
         (250 letters)



>mm_chr15_17705887_17706535
          Length = 649

 Score =  400 bits (207), Expect = e-116
 Identities = 240/251 (95%), Gaps = 3/251 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgatggttgagaaaagttctgttgttatttgtttgaatggcctttctaccacttcag 60
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 201 ctctgatggttgagaaaagttctgttgttatttgtttgaatgggttttctaccacttcag 260

                                                                       
Query: 61  catgctgaaatccttcttgaataccaatagtccaaatatatatgtatatttttgctttta 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 catgctgaaatccttcttgaataccaatagttcaaatatatatgtatatttttgctttta 320

                                                                       
Query: 121 atagtgacttaaaatccctgtaagctttcttttaactct-tctctttaaggtttcgaaga 179
           ||||||||||||| |||||||||||||| |||||||||| | ||||||||||||| ||||
Sbjct: 321 atagtgacttaaagtccctgtaagcttt-ttttaactctgt-tctttaaggtttcaaaga 378

                                                                       
Query: 180 gcctgtatttaaactggtttgcttacttattagttcctctatcctgatatgtgttacttt 239
           |||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 379 gcctgtatttaaaccggtttgcttacttattagttcctctatccttatatgttttacttt 438

                      
Query: 240 tattatatttt 250
           |||||||||||
Sbjct: 439 tattatatttt 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 649
Length adjustment: 9
Effective length of query: 241
Effective length of database: 640
Effective search space:   154240
Effective search space used:   154240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)