Query= MSMg01no057_h09.b1 MSMg01no057_h09.b1 CHROMAT_FILE:
MSMg01no057_h09.b1 PHD_FILE: MSMg01no057_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:25 2005
(553 letters)
>mm_chr15_31664060_31665012
Length = 953
Score = 992 bits (513), Expect = 0.0
Identities = 540/549 (98%), Gaps = 2/549 (0%)
Strand = Plus / Plus
Query: 6 gaattccttggt-gccactgtgtgaaaaaaaaaaaacccaccatgtaacccatttgtctc 64
|||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 206 gaattccttggtggacactgtgtg-aaaaaaaaaaccccaccatgtaacccatttgtctc 264
Query: 65 agatgttttaaaattatgaatacaacccacaagagaatagcagtttgcattcagctttgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatgttttaaaattatgaatacaacccacaagagaatagcagtttgcattcagctttgt 324
Query: 125 cctggtggttgatggcagtgagtactttcataaatcctttagaaaatagattccattttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctggtggttgatggcagtgagtactttcataaatcctttagaaaatagattccattttt 384
Query: 185 caagaagcctcagctgtcagaatctgatttcctggttgaatgaaatggccttgttattca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caagaagcctcagctgtcagaatctgatttcctggttgaatgaaatggccttgttattca 444
Query: 245 aatcctttgggtgtaaatttattttacatgaatttactcaagaaattgattacaattccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatcctttgggtgtaaatttattttacatgaatttactcaagaaattgattacaattccc 504
Query: 305 ttcccaccttgtgtcgtgagttgtataattggaagtttagcgagaagagatcgaaataac 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 ttcccaccttgtgtcgtgagttgtataattggaagtttagcgagaagagatcaaaataac 564
Query: 365 tttaaatgactctcctccccccaaattttcagactaggagactttgggctttcttagctt 424
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 tttaaatgactctcctccccccaaattttcagactaggagactttgggttttcttagctt 624
Query: 425 ttatgtcttcggtcttttaaaaacatcaatgcctattgggctttttatccgtttgctttt 484
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 625 ttatgtcttcggtcttttaaaaacatcaatgcctattgggcttttcatctgtttgctttt 684
Query: 485 gagaaacaaactcaaagaaagggctacggttgcttgtcatccttgtccccactacaactg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 685 gagaaacaaactcaaagaaagggctacggttgcttgtcatccttgtccccactacaattg 744
Query: 545 atagtgctg 553
|||||||||
Sbjct: 745 atagtgctg 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_h09.g1 MSMg01no057_h09.g1 CHROMAT_FILE:
MSMg01no057_h09.g1 PHD_FILE: MSMg01no057_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:25 2005
(447 letters)
>mm_chr15_31767186_31768032
Length = 847
Score = 781 bits (404), Expect = 0.0
Identities = 437/448 (97%), Gaps = 2/448 (0%)
Strand = Plus / Minus
Query: 1 ctggtgtataacaatgatttttactttaggtacttgttttatattcctgttttaggttga 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 647 ctggtgtataacaatgatttttactttaggtacttgttttatatttctgttttaggttga 588
Query: 61 ttcttggaatgttaagatacacttaggatggggataattgagaaggaactagaagatata 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 587 ttcttggaatgttaagatacacttaggatggggataactgagaaggaactagaagatata 528
Query: 121 gctaatggttaagagacagaaactgccagcagtggtgttagttagcagtagcctgttaca 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 527 gctaatggttaagagacagaaactgccagcagtggtgttagttagcagtggcctgttaca 468
Query: 181 tacctgcatgtttctggtcacctctgcagttacctcctgtaggtctgaagtgggtagact 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tacctgcatgcttctggtcacctctgcagttacctcctgtaggtctgaagtgggtagact 408
Query: 241 catgcacgggttgactcatcatcagaatctaagctgttcaagatgcccatcctgactcag 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 caagcacgggttgactcatcatcagaatctaagctgttcaagatgcccatcctgactcag 348
Query: 301 gaaccatggctcctaggttaggtggcc-tctgctttctgccaatatcactgctaacaaga 359
|||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 347 gaaccatggctcctaggttagggggccgt-tgctttctgccaatatcactgctaacaaga 289
Query: 360 tagctgctgcatttccttatgtgaataatttgttttgtcaccttcatgtggacccataag 419
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 288 tagctgctgcatttccttatgtgaataatttgttttgtcacctccatgtggagtcataag 229
Query: 420 aaggtagaacacctgtttttctttttgt 447
||||||||||||||||||||||||||||
Sbjct: 228 aaggtagaacacctgtttttctttttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
