BAC Information

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BAC

Clone NameMSMg01-057L13
Chromosome15 (Build37)
Map Location 63,059,230 - 63,059,802
singlet/doubletsinglet
Overlap genenone
Upstream genePvt1, LOC100040430, Tsg101-ps
Downstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057L13.T7 (MSMg01no057_l13.b1)MSMg01-057L13.TJ (MSMg01no057_l13.g1)
ACCAG284809AG284810
length824703
length of high quality
(start - end)
---573 (70 - 642)
definitionCHROMAT_FILE: MSMg01no057_l13.b1 PHD_FILE: MSMg01no057_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:46 2005CHROMAT_FILE: MSMg01no057_l13.g1 PHD_FILE: MSMg01no057_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTTCCTTTTCCTTTCCTCTTTTCCATTCCCCCTCTCCCTTTNTTTTC
TCCCCCTCCTCCCTCCCCCTATTATTTCCAATCTCTTTNTCCCTTGACAT
CTTCTCTCCCNTCTTCTCCCCTTTTTTGTTCCCCTCCCTTTACACCTCAC
TCAACATTTTACCTAATCACACTTGTACACCCTTACTCATTAACATTGCC
ATCTTATCTAACATTCCAGTCGTCTCATAAAGCGTCATACTGTTGCTTAT
CCGCGTATGCTGAGATGTGGGCGGAGCGACGCGATCGTTGTCTGGTCCGG
TCCCTCATACTATCGATTTTTCTCGTAGTCTCTATTCGCGAATAGACGCG
CGAGATGTAAAGTGATCGCGTCCGGGACTCGGCGCTACCCAAGACTCTAG
TTCTTTTTACACCGCGCGTACCCTCGCTTTCGTTTTCCACCTTTTTCGTT
CGCGTTCCTTTCTTCCGTTGCACTTGACGCATCTCTCGCCTCATTGTGTG
CAAGCATCGACGGTGACGCGCCCATCGTTTTATTCGTCAACCCGTTGCCA
ATATCATCATTTTCGAGTATCTCGGTCGCTGTATTCTATGCGATACAATG
TAATCGCGGGCTATAGACGCATTTTATACGTGGGCAATTGATGGTTACGA
CTGATGTTACTCATATGGAGACACGCGGAGTACTCGCGCTAAACGTTAGT
TGCTGATCGTTACAGTACATGTGCAACCGGCACGAGTACATGGCAATCAT
CCCTCCGACGGTTGCCCGCCTACTCGACCGCGTTGCGTTCCGTTGGAGAA
CCGCTGCCCGTTGTTCGGCGGCTG
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTGAAGTTGCATTGGAATTCCATTATGACT
GTCTAGCCCTTTGAATTTCTCATCTATGAGGTTTTCAATATGAGACACCT
AATTGTGCAGAAGAGTGTATGTTTGCATCTTATCTTTAACTCAGATGCCA
TTCCCAACCCCTCTTTTCAAATGTTTGCACCTTAGTTTTCCAGATCTGTC
TTCCCCATTTCCTTCCAGCTCAAGATTTTTGTTTGTTGGCTAGAAACCAC
TCAGTCCCATTGGAAAGTATTCTAAAAATGTTACACATTTCCTAATATCT
TATGATAAGCTTTTGTGTTTACTTATTTCTTGTGGTGAGGTGGGCCTATA
GCAATTCTCAGCTGGGGATCATACACAGCATTTGGGGGAGATCTTGGAAT
GACAGTTATCGTCCCACTAGTTGCCAAACAAGATTCAACTGCCTGGAGGG
CTGACAAAGATATGAATGGGAAATGACGTCATAGCCCCACAGCACTGTGA
CAATGAACTCAAATCAAGGGCTCATAGCCACTTAGGAGAGAGGCAATATG
AAAGATAGCTGTGCATAATTCTTTTTGTTGTAGAAATAAGAAAATTCAGA
GAGGAAACTGGACAGCCTTGTTCAAAGTCTTATCTCTAAGGTACCAAAAG
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_l13.g1 MSMg01no057_l13.g1 CHROMAT_FILE:
MSMg01no057_l13.g1 PHD_FILE: MSMg01no057_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:46 2005
         (573 letters)



>mm_chr15_63059030_63060002
          Length = 973

 Score = 1093 bits (565), Expect = 0.0
 Identities = 571/573 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaagttgcattggaattccattatgactgtctagccctttgaatttctcatctatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 actgaagttgcattggaattccattatgactgtctagccctttgaatttctcatctatga 714

                                                                       
Query: 61  ggttttcaatatgagacacctaattgtgcagaagagtgtatgtttgcatcttatctttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ggttttcaatatgagacacctaattgtgcagaagagtgtatgtttgcatcttatctttaa 654

                                                                       
Query: 121 ctcagatgccattcccaacccctcttttcaaatgtttgcaccttagttttccagatctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctcagatgccattcccaacccctcttttcaaatgtttgcaccttagttttccagatctgt 594

                                                                       
Query: 181 cttccccatttccttccagctcaagatttttgtttgttggctagaaaccactcagtccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cttccccatttccttccagctcaagatttttgtttgttggctagaaaccactcagtccca 534

                                                                       
Query: 241 ttggaaagtattctaaaaatgttacacatttcctaatatcttatgataagcttttgtgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttggaaagtattctaaaaatgttacacatttcctaatatcttatgataagcttttgtgtt 474

                                                                       
Query: 301 tacttatttcttgtggtgaggtgggcctatagcaattctcagctggggatcatacacagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tacttatttcttgtggtgaggtgggcctatagcaattctcagctggggatcatacacagc 414

                                                                       
Query: 361 atttgggggagatcttggaatgacagttatcgtcccactagttgccaaacaagattcaac 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 413 atttgggggagatcttggaattacagttatcgtcccactagttgccaaacaggattcaac 354

                                                                       
Query: 421 tgcctggagggctgacaaagatatgaatgggaaatgacgtcatagccccacagcactgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgcctggagggctgacaaagatatgaatgggaaatgacgtcatagccccacagcactgtg 294

                                                                       
Query: 481 acaatgaactcaaatcaagggctcatagccacttaggagagaggcaatatgaaagatagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acaatgaactcaaatcaagggctcatagccacttaggagagaggcaatatgaaagatagc 234

                                            
Query: 541 tgtgcataattctttttgttgtagaaataagaa 573
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tgtgcataattctttttgttgtagaaataagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)