BAC Information

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BAC

Clone NameMSMg01-057P20
Chromosome15 (Build37)
Map Location 29,569,067 - 29,569,582
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057P20.T7 (MSMg01no057_p20.b1)MSMg01-057P20.TJ (MSMg01no057_p20.g1)
ACCAG285011AG285012
length713719
length of high quality
(start - end)
603 (37 - 639)502 (72 - 573)
definitionCHROMAT_FILE: MSMg01no057_p20.b1 PHD_FILE: MSMg01no057_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:07 2005CHROMAT_FILE: MSMg01no057_p20.g1 PHD_FILE: MSMg01no057_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTACAA
GACCTTTCCAGAAGACCTGATACCAATTTTCCTCAAACTGTTGCATAAAA
TAGAAAGAGAAGGAACACTACTTAACTTGTTCGATGAAGCCACAATTACT
CTGATACCTAAACAACACAAGGACACAACCAAAAAAGAGAACTTCAGACC
AATCTTGCTTATGAATATCGATGCAAAAATACTCAATAAAATTCTTGCAA
ACTAAATCCAAGAACACATCAAAACCATCATTTACAACTGTTGCTATAAA
TCTCCAACCCAAATAAGCCTGGACAATGAAAACACAACTCAATTAATATG
AACACAAGCTTTGTGCCTAGATTGGGCAGATCTACCACTACACTACCATC
TTCTCTATATAACAGACCCCTTAGAACTTGGGGTTTCTCTAGGCCATGTG
CTCTTCTTGTACTTCCATAGACCTCTCTCTCTCAAAACCTTCAGCTCCAC
CTTCCCCTCTTTTCTGCCCAATCACTGGCACTAGCCTTTATTTATAAATT
AAGGTGGGAAGAAGGTTTACAGGAAATCACCTGAATGCTGACTCACTCCT
TGTTTACAACCCCTCACAGGAGAACTGAATTAACATCAAATAAAATTAGC
CTCAGGGCTATCTGCAACACATCAGATCAAGTAGGCTTCATCTCAGAGAT
GAAAGATTGGCTC
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTGGGACTTGTTATTTCCATTTGAGTTT
TATAATTTTTCCCCTCCACCATTTCCTTTGAAGAAGAATGGCCTTGGACT
TTCGATGGGGGAGTTCACTCACTCTGTAGGTTTCTGTCAGTGATGCAGCC
ATTTTAATGCTATTAATTCTGCTGATTGATGATCTTCTATTCTATTTTCA
CCACCTCTTTCATTGTTTGATGCTTGTCATGGTAGTATTCTCTAAATCAT
GGTTAAGTTTATGTCTTGGCAAATTATCATATTTTTATTCTACTTAAATT
ATTTTCAATGACATTATTACTGGAGTTTAGAAAAACTTCTGATGTATATA
TCTTAATTTTGAGACCCTCTATTTGGATGAAAATATGTCTCAGCTTCCAA
GACTCTCATAATGGGCATTTCCTTTCAAGTGCTATTTGCCTTTTTCAGCC
CCTTTCTTTGTATATTACTAAAGAGATTTGTACTTATTTCTAACAAGAAA
ACTGGATGTGCGTAATATTAAATTTACAGAATGAAAATAATGAATCGCGT
TAAGAAGCCTTCCTACTCTTCATGTTTTGTATAGCAAAGTTGAGAGTATT
TGGTATTAATTCCCTGATTCTCGGCATACTATTAAAGGTGAATCCCTTTT
GTCCCTGTGTCGTCTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_p20.g1 MSMg01no057_p20.g1 CHROMAT_FILE:
MSMg01no057_p20.g1 PHD_FILE: MSMg01no057_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:08 2005
         (502 letters)



>mm_chr15_29568706_29569607
          Length = 902

 Score =  862 bits (446), Expect = 0.0
 Identities = 492/516 (95%), Gaps = 14/516 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgggacttgttatttccatttgagttttataatttttcccctccaccatttcctttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 877 cttgggacttgttatttccatttgagttttataatttttcccctccaccattttctttga 818

                                                                       
Query: 61  agaagaatggccttggactttcgatgggggagttcactcactctgtaggtttctgtcagt 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 817 agaagaatggccttggactttcgatggggtagttcactcactctgtaggtttctgtcagt 758

                                                                       
Query: 121 g--------------atgcagccattttaatgctattaattctgctgattgatgatcttc 166
           |              |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gatgcagccattttaatgcagccattttaatgctattaattctgctgattgatgatcttc 698

                                                                       
Query: 167 tattctattttcaccacctctttcattgtttgatgcttgtcatggtagtattctctaaat 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tattctattttcaccacctctttcattgtttgatgcttgtcatggtagtattctctaaat 638

                                                                       
Query: 227 catggttaagtttatgtcttggcaaattatcatatttttattctacttaaattattttca 286
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 637 catggttaagtttatgtcttggcaaattatcatatttttattctactcaagttattttca 578

                                                                       
Query: 287 atgacattattactggagtttagaaaaacttctgatgtatatatcttaattttgagaccc 346
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 577 atgacattattattggagtttagaaaaacttctgatgtatatatcttaattttgagacct 518

                                                                       
Query: 347 tctatttggatgaaaatatgtctcagcttccaagactctcataatgggcatttcctttca 406
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 517 tctatttggatgaaaatatgtctcagcttccaagactcttataatgggcatttcctttca 458

                                                                       
Query: 407 agtgctatttgcctttttcagcccctttctttgtatattactaaagagatttgtacttat 466
           |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agtgttatttgcctttttcagtccctttctttgtatattactaaagagatttgtacttat 398

                                               
Query: 467 ttctaacaagaaaactggatgtgcgtaatattaaat 502
           ||||||||||||||||||||||| ||||||||||||
Sbjct: 397 ttctaacaagaaaactggatgtgggtaatattaaat 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)