BAC Information

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BAC

Clone NameMSMg01-058A01
Chromosome15 (Build37)
Map Location 45,261,501 - 45,261,890
singlet/doubletsinglet
Overlap genenone
Upstream geneEny2, Pkhd1l1, Ebag9, 5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
Downstream geneLOC100039389, EG432951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058A01.T7 (MSMg01no058_a01.b1)MSMg01-058A01.TJ (MSMg01no058_a01.g1)
ACCAG285020AG285021
length702712
length of high quality
(start - end)
390 (67 - 456)237 (76 - 312)
definitionCHROMAT_FILE: MSMg01no058_a01.b1 PHD_FILE: MSMg01no058_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:08 2005CHROMAT_FILE: MSMg01no058_a01.g1 PHD_FILE: MSMg01no058_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTTGCGGCGCTAAACGACTCACTATTCAAAGAGGATCCGCGGAATTC
TATCATTACCATAGAGAATTCTACTATGAACTTTGTTTCCTTTTCTCTAA
AAACAGGTATAGAACAGGGTCATTTAGAGCAGAGTAACTCATTTCAAGTG
AGAAATTTATTGACACATGTAACATACACTTTGTTCTGCCTTGGAGTGTA
TAGTTCAAAAAGAGATACTAGGATCACAGATTTTTCTAGATGCATAGAGT
TACAATAGGGGAATGGAAAGAGAAATGAGATTCTGTCAAAAGTAGCCTTG
TTTTTTTTTCCTTTATTGACTGTTTATTCTTAGCAGCTTGTACTTATGAA
TACTTTATAATTAAATTACAAAAACCTTAGGATTAAATCTATGAACCATT
CTGCCATCTGGTAAGGAACTCTGCTATTATATAAACAATTACTTTTCTAA
ATTAAAACGAAGTAGGTATCAACATGTATGCTTTCATTCGTGTGTTGACA
AATATGTATACTAACCATTCCATTCCAAATTTTGAATATTTGAATTATTC
TTATACCTTTCTACTTTTTTTCTAAACTTTTGTATTACAATAGTTTTACT
TTTACTGAATGACTGATCCCTATGCTAGTGAACACTGCGTATTTATTATT
AACATCCAAACTGTTGTCTCATTAGCTTATTTTCTAAAAATATTTTTTTA
TG
NCCCCGCGATGCAGTGCGAGGCCTGGCGGCCGCCTGTTTCAAAACATGGG
GGTGAACTATAGAATTCTCAGAGAAATTCTCCTGTAGTCAAAGATAAGTG
ACTTGTCCAGCCATCACCAGAGAAGTTTCCTTCTTTAGTAAGTGGGAAAA
AAAAACACAGAGATCCACAACCAGACATTATGCAAAGAGTGAGAGAACTT
GGAATACTCATCCCAATATTGGGTGTCTTCATCAAATCCCTGTTTACTAG
GCTAATGGAACCCTGCAGAAGGAGGAGGAGAAGAATGTAAAAACTAGAGA
GGATGGAGGGCATCAAGAAACCTAATATGGTATATGCACATATGTGCTGA
GACTGAGGCAGCAAACACAGACCCTACACCAGAAGGAGTTCTAAAACTGA
TAGAAGGGAACACATACATCTATCCCTAACCCAGAAGCCATCTCGAACTG
ATAACCACTTGCAAATGAAGTTAGCTTTTCCAACATAATTTCACTGGAGA
AACAAACTACTCTTAAAGATAAGCTGTAAGTCCAGCAGTAAATGGCAAAC
AGAAAATGAGCTAATTCACTGGCATATTTGGATGTTTTTTTTTTTTTTCA
AAATGCCACACCAGGACTTTTAAAAATTATCTGATTTTTAATCCATATCT
TATTTTAATATATTTTTCTTGCCTTTTACCCTAACGGTCTTTTTCATTTG
TAATATACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_a01.b1 MSMg01no058_a01.b1 CHROMAT_FILE:
MSMg01no058_a01.b1 PHD_FILE: MSMg01no058_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:08 2005
         (390 letters)



>mm_chr15_45261301_45262090
          Length = 790

 Score =  731 bits (378), Expect = 0.0
 Identities = 387/390 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctactatgaactttgtttccttttctctaaaaacaggtatagaacagggtcattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctactatgaactttgtttccttttctctaaaaacaggtatagaacagggtcattta 260

                                                                       
Query: 61  gagcagagtaactcatttcaagtgagaaatttattgacacatgtaacatacactttgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcagagtaactcatttcaagtgagaaatttattgacacatgtaacatacactttgttc 320

                                                                       
Query: 121 tgccttggagtgtatagttcaaaaagagatactaggatcacagatttttctagatgcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccttggagtgtatagttcaaaaagagatactaggatcacagatttttctagatgcata 380

                                                                       
Query: 181 gagttacaataggggaatggaaagagaaatgagattctgtcaaaagtagccttgtttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 gagttacaataggggaatggaaagagaaatgagattctgtcaaaagtagccttgtttctt 440

                                                                       
Query: 241 tttcctttattgactgtttattcttagcagcttgtacttatgaatactttataattaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcctttattgactgtttattcttagcagcttgtacttatgaatactttataattaaat 500

                                                                       
Query: 301 tacaaaaaccttaggattaaatctatgaaccattctgccatctggtaaggaactctgcta 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaaaaaccttaggattaaatctatgaaccattctgccatctggtaaggaactctgcta 560

                                         
Query: 361 ttatataaacaattacttttctaaattaaa 390
           ||||||||||||||| ||||||||||||||
Sbjct: 561 ttatataaacaattagttttctaaattaaa 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)