BAC Information

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BAC

Clone NameMSMg01-058H10
Chromosome15 (Build37)
Map Location 92,365,303 - 92,469,444
singlet/doubletdoublet
Overlap genePdzrn4
Upstream geneSlc2a13, Lrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058H10.T7 (MSMg01no058_h10.b1)MSMg01-058H10.TJ (MSMg01no058_h10.g1)
ACCAG285373AG285374
length718712
length of high quality
(start - end)
401 (121 - 521)249 (61 - 309)
definitionCHROMAT_FILE: MSMg01no058_h10.b1 PHD_FILE: MSMg01no058_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:43 2005CHROMAT_FILE: MSMg01no058_h10.g1 PHD_FILE: MSMg01no058_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,469,044 - 92,469,444)(92,365,303 - 92,365,530)
sequence
GCGGCCGCTATACGACTCCTATTTCGAGAGGAGGCGCGGAATTCTAAGGT
ATTCCCCTGCTAAGCATCTGGTGATTTATTTCATGCTGCAGTTTCTTGGG
GGGCGGGGGGTGCAAAGTCCAGATTCTATTTGAAGAAGATGGTGTTGAAA
GCTCAGTCTCCCCAAGAAAGAGAAACATCGATGTCGGAGGGAGCTGATTT
CTCCACTTTCTTCCTGAGAGACTCAGCAATGTCAGCTGAATTGTTTTTAT
GCAGTCAGTCCTGTTTATTGAACACCTACTAGACACCATAGTCCAGCACT
GGGTGTTAAGGATTTCAATGGGAAAGAGAGGTTAAAAATTATGTCTACTG
AGGAGAAATAGGCACAAGAACACACTATCAAGATGCGAGCACATCTAACT
CATGATGGGTATTGTAACTATCTATAGCCACAGCTTACCGGATGTGACTA
CTTACAATTGCATTTTCCACATTGCATGAAAAATTTGCCTCCAAACACTT
CTTCCAAGTGTCTTTTGTTTGTTTTGTTTTTGCTTTTGTTTTTAACATTA
TATCATGGTATCGTGACTCCAGACATTCAGGGCTTAAAGGAAAGGGGTAT
CTTGTTCCTTCACACTTCCCCACCTACTTACTCCCACATCCGGTTTCCTT
AATAATCATATTACCATTAAGGAACTCCTCCTCCCTCGGGAAAAAGGCTT
TAATCCTACTCTTGGGGG
GAGAGGCTGGCGGCGCCTGGTTCAAAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAATTCACGATACTTTGTTTAACGGAATTGTTACTATCATC
ACCAGTGCTAACAATCTGTAATTTTTTTAAACTGACATATCCGCTTCATA
AAAGGAGTTTAGAAGTACCCTTCCTTTAGGAGATTAATATTAAGTGTGTG
TGCATGCATGTGAGTGTGAATGTCCATGTGTGTTCATATATGTGTCCATG
TCTGTGTGCATGCGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCACGTG
CGTGCGCACACTCCTATATATTTCAGACAAGGTCTTCCTCTATAGACTGT
GGTTCCTTATATAGGCCTGACTGGTTGACTAGTCTGGATCTTACTAGAAG
AGGTTAGTTTTGAATCTAGGATGCTTCTGAGCGCTGGTAATATAGAGGCA
TGTGTCACCTCGTTCTGACATGTGATTTTCAGTGTATGGTATAATAGCCA
AAGAGACTCTTCTTGACTGGATTTTTAACCTTACCCCTTCTGTACCGATT
TTGACCCTTGTTCATGTTCTATCTGGTCAGACCTCCCCTTAATATGATTC
CTCTTAACGAACCACCTCGCTAACATGACGTATTCGCCCACCCTCGCCAA
TTCCCGTTATGTGTATCTTCCCTACCTGTTGCCCGCCGCGCCAAATGTTT
TCCGTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_h10.b1 MSMg01no058_h10.b1 CHROMAT_FILE:
MSMg01no058_h10.b1 PHD_FILE: MSMg01no058_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:43 2005
         (401 letters)



>mm_chr15_92468844_92469644
          Length = 801

 Score =  729 bits (377), Expect = 0.0
 Identities = 395/401 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agattctatttgaagaagatggtgttgaaagctcagtctccccaagaaagagaaacatcg 60
           |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 601 agattctatttgaagaagttggcgttgaaagctcagtctccccaagaaagagaaacatcg 542

                                                                       
Query: 61  atgtcggagggagctgatttctccactttcttcctgagagactcagcaatgtcagctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atgtcggagggagctgatttctccactttcttcctgagagactcagcaatgtcagctgaa 482

                                                                       
Query: 121 ttgtttttatgcagtcagtcctgtttattgaacacctactagacaccatagtccagcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 481 ttgtttttatgcagtcagtcctgtttattgaacacctactagacaccatggtccagcact 422

                                                                       
Query: 181 gggtgttaaggatttcaatgggaaagagaggttaaaaattatgtctactgaggagaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gggtgttaaggatttcaatgggaaagagaggttaaaaattatgtctactgaggagaaata 362

                                                                       
Query: 241 ggcacaagaacacactatcaagatgcgagcacatctaactcatgatgggtattgtaacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 361 ggcacaagaacacactatcaagatgcgagcacatctaactcatgatgagtattgtaacta 302

                                                                       
Query: 301 tctatagccacagcttaccggatgtgactacttacaattgcattttccacattgcatgaa 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctatagccacggcttaccggatgtgactacttacaattgcattttccacattgcatgaa 242

                                                    
Query: 361 aaatttgcctccaaacacttcttccaagtgtcttttgtttg 401
           ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 241 aaatttgcctccaaacacttcttccaagtgttttttgtttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no058_h10.g1 MSMg01no058_h10.g1 CHROMAT_FILE:
MSMg01no058_h10.g1 PHD_FILE: MSMg01no058_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:43 2005
         (249 letters)



>mm_chr15_92365103_92365751
          Length = 649

 Score =  433 bits (224), Expect = e-126
 Identities = 227/228 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcacgatactttgtttaacggaattgttactatcatcaccagtgctaacaatctgta 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcacgatactttgtttaacgggattgttactatcatcaccagtgctaacaatctgta 260

                                                                       
Query: 61  atttttttaaactgacatatccgcttcataaaaggagtttagaagtacccttcctttagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttttaaactgacatatccgcttcataaaaggagtttagaagtacccttcctttagg 320

                                                                       
Query: 121 agattaatattaagtgtgtgtgcatgcatgtgagtgtgaatgtccatgtgtgttcatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agattaatattaagtgtgtgtgcatgcatgtgagtgtgaatgtccatgtgtgttcatata 380

                                                           
Query: 181 tgtgtccatgtctgtgtgcatgcgtgtgtgtgtgtgtgtgtgtgtgtg 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtccatgtctgtgtgcatgcgtgtgtgtgtgtgtgtgtgtgtgtg 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)