BAC Information

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BAC

Clone NameMSMg01-058O05
Chromosome15 (Build37)
Map Location 17,895,450 - 17,895,656
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162
Downstream geneLOC666835, LOC666839, Cdh10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058O05.T7 (MSMg01no058_o05.b1)MSMg01-058O05.TJ (MSMg01no058_o05.g1)
ACCAG285696AG285697
length687726
length of high quality
(start - end)
544 (64 - 607)248 (85 - 332)
definitionCHROMAT_FILE: MSMg01no058_o05.b1 PHD_FILE: MSMg01no058_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:15 2005CHROMAT_FILE: MSMg01no058_o05.g1 PHD_FILE: MSMg01no058_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTC
TTGCTGTCCCATACTAGCTCGGACAAGAAGTGGTGCCAAGAAATCCGGGA
ATTTATCATCACCAGGCGCTGATAGGAGACCCCCGTTTCACGGGGCGGGT
TCAGAACTATGGGACACTTTACAGCTCTGCAAGGTATGTACAGTTTTGAA
ATTTCTCCAGAGTTAGTTGCCCTTTTGATTGTTTTCATGGCGATTATTCC
TTCCCTTTCGGTTTCGTTTTGCTTCCACCGCTGGAACTGCTGACTGGTTC
TCAGTCGTGGTCAGGCCTGGACAGCGACCAGTATTGCTGACTGGTTCTCA
GTGGTGGTCAGGCCTGGACATCAACCAGTATGGGAATCTCCCACTCTGTG
GTGACCACCTTATGGTCGGTCCTGAAGCAGCGTGGCTTGAAAGTAGCCAC
CAAAACATTAGAAGGCTTTGTAAAAGAGGTAGATAATATAGCACCGTGGT
TTGTGTGCTCAGGGTCCTTAACTATACCCTCTTGGGAGAAACTCAAGGGA
GATTTAGTTAGGGAACTTCAGAATGGCAAACTTAAAGTAGGAACCATGCT
GTTGCGGGAGCTGATAAGATCGTGCTTTAAGGACAAGGAATGTCCACAAG
TGTTTTAATGCACGGCAGAGAATTCTGGATGAAATTT
CCANNNAACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGTGGTCCAAACT
ATTGAATCCTTTTTGTTTTCAAGAGCCTGCATAATAGTCTTTGAAAGTAT
GTAAAACAGACACATAGAAGCTAACACGTTGGTTCTAGTATGTTTTCTCT
GTATCATGTATCAAAAAAAGAAAGGAAGTAAGTAAGTAAGTAAGGAAGGA
AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGGAAG
GAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAATTTTGAATGAAAGACCGG
TCTTATATGATCCAGCTGCTATAATTAATAACTTTTTCTACGTGATGAAA
GGCTATCAGGATGATTCTTCTGGTCACTAACTACCCATTACCTGATTGAC
CCATCGATCTGCGTTCAACCTCTGACATTCCCAAGTTGCTCATGCGTCTT
CCCTACTTTCTGCAACTATTGTCCTATTTTTCCACTGTTTGCCTAATAAT
ACTCGCCTTCATCCCCATTCCCTCATCTCTCCCTTTTCCTCAATTCGCGC
GTGCGTTTAACACATACATCACTTATCCCCCACCCCCTTTCTCCTATACC
CTCCTATCCCTTTTTCTAAACTATATACTTAATCTTCCTATTTATCCTTA
TGCCTTTTCCCCTTTTTATACTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_o05.g1 MSMg01no058_o05.g1 CHROMAT_FILE:
MSMg01no058_o05.g1 PHD_FILE: MSMg01no058_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:15 2005
         (248 letters)



>mm_chr15_17895324_17895971
          Length = 648

 Score =  315 bits (163), Expect = 1e-90
 Identities = 196/207 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggtggtccaaactattgaatcctttttgttttcaagagcctgcataatagtctttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 acaggtggtccaaactattgaatcctttttgttttcaagagcctgcataatagtctttga 274

                                                                       
Query: 61  aagtatgtaaaacagacacatagaagctaacacgttggttctagtatgttttctctgtat 120
           |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 273 aagtatgtaaaacagacacatagaaggtaaaacattggttctagtatgttttctctgtat 214

                                                                       
Query: 121 catgtatcaaaaaaagaaaggaagtaagtaagtaagtaaggaaggaaggaaggaaggaag 180
           |||||||||||||||||||||||| ||| ||| ||| | ||||||||||||||||| || 
Sbjct: 213 catgtatcaaaaaaagaaaggaaggaaggaaggaaggatggaaggaaggaaggaagaaaa 154

                                      
Query: 181 gaaggaaggaaggaaggaaggaaggaa 207
           ||||||||||||||||||| |||||||
Sbjct: 153 gaaggaaggaaggaaggaaagaaggaa 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)