BAC Information

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BAC

Clone NameMSMg01-060A06
Chromosome15 (Build37)
Map Location 42,294,782 - 42,295,264
singlet/doubletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060A06.T7 (MSMg01no060_a06.b1)MSMg01-060A06.TJ (MSMg01no060_a06.g1)
ACCAG286559AG286560
length712708
length of high quality
(start - end)
42 (77 - 118)485 (76 - 560)
definitionCHROMAT_FILE: MSMg01no060_a06.b1 PHD_FILE: MSMg01no060_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:39 2005CHROMAT_FILE: MSMg01no060_a06.g1 PHD_FILE: MSMg01no060_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACAGGATCCGCG
GAATTCGCTGTCCACATACATACTTCAAGCTCGCATTGGCTTTAAGGAAA
AATGCAAATAATTATTCCTGAAGTAAGAGGCATTTCACCTCAGACTCTTC
CTGCTGGGCTAACAAACATCTCACAGAAAGGGAGCTCTCTGGGAGTGTCT
CACTAGGTGTCATTATTGATTAGTGACACCTATTCTCTTAGGAAAGCCTT
TGGAAATGTAGAGCTTCAAGGGGCCTTGATAATTACGGATGAAGTTTTCA
GTTGCTCTCTGTCCTTTTTTGTTAACTGAACTGTTACGTGATGAGATGCC
CATTATTTTTTTTTTGCCTGGCAAGTCCCTGTGTTACCCTCAGTAGCCAG
CCATTCTTGCTCCCAGCACTCTATAAGCTTCATATTTTAAGGTACCCTTC
CCTACTCTCCCTCCTAACACTGCCCCCCCCTTGACATGCCCCAGCGCCTC
CCCCCGACCTGACCCCACCATTTGATCTTTCCCCCCGCTATTTTACTGCC
TGTCACTCCGCCACCCCCCCCTTACACCTTATTATCCCCCTTCCCCCGAA
AGTTCCTCTCTTTCTGCATTCGCTCTTCACTACCTCCCTGCTTTTTCTCT
CTCTCCCCCCACTTACCCTTATTCTCCTCCTCATCCTTCCTGATTTTCCT
ATTCCCCTCTCG
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTAGCAACAAAACTCCTAAAAATTCAAACATTTCTTGC
TAAACAGTTGGCTTTGTATTCTTACTTTTTTTTCCTTTCAGGAGGAAGCA
ACTGAAGAGAAAAACACTGTAAGTTGCCTTTAGAAACCAAATTTTAATTT
CATGCACCTCACCTAGAAAACTTTCTAAATGAGCAGTTTGACTACAAGGA
AGCAATATGGATATTGGAGAAGTAGGGGGAGGGAGAAAAACCATCTAATG
GCCACGTGTGATGAAGCAGAAATTTTTGCTTCCTCAATAAGTTGACAGAT
AGGCCAAAAGGGGGAAATGGAAGCAGGTTCCCACATTAGTAAACTGTTGG
GTAGTTTATCAGACACCACCACATATCTGATGTGGGGAACAACGGCTTGG
CTTGGATTAAGTAACCAGTCCCCTTATCTCCGCTACACTTGAATACTCAC
TTTGACATACAGTTTCAGTGGGACTTTCTGCTTCAATTAAGAGACTCAGT
TTCCCCATGTGCAAATCAGCGGTTAAGTGCGCCGTGTTATAAAAATAACC
ACTATCCGAGACGCTCGAGTGTTCCCCCGCGAGCAGCACTTATGGAAAAC
CTACTGAGAGGATCTGTCCAAGTATACAGACTCTCCCCGCCCCCTGCTTT
TCTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_a06.g1 MSMg01no060_a06.g1 CHROMAT_FILE:
MSMg01no060_a06.g1 PHD_FILE: MSMg01no060_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:39 2005
         (485 letters)



>mm_chr15_42294582_42295464
          Length = 883

 Score =  837 bits (433), Expect = 0.0
 Identities = 472/489 (96%), Gaps = 10/489 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctaaaaattcaaacatttcttgctaaacagttggctttgtattcttacttttttttcc 60
           ||||||||||| |||||||||||||||||||||||||||||||  |||| ||||||||||
Sbjct: 201 tcctaaaaatttaaacatttcttgctaaacagttggctttgtaaactta-ttttttttcc 259

                                                                       
Query: 61  tttcaggaggaagcaactgaagagaaaaacactgtaagttgcctttagaaaccaaatttt 120
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 260 tttcaggaggaagcaactgaagagaaaaacactgcaagttgcctttggaaaccaaatttt 319

                                                                       
Query: 121 aatttcatgcacctcacctagaaaactttctaaatgagcagtttgactacaaggaagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatttcatgcacctcacctagaaaactttctaaatgagcagtttgactacaaggaagcaa 379

                                                                       
Query: 181 tatggatattggagaagtagggggagggagaaaaaccatctaatggccacgtgtgatgaa 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 tatggatattggagaagtagggggagggagaaaa-ccatctaatggccacgtgtgatgaa 438

                                                                       
Query: 241 gcagaaa----tttttgcttcctcaataagttgacagataggccaaaagggggaaatgga 296
           |||||||    |    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcagaaacaact----gcttcctcaataagttgacagataggccaaaagggggaaatgga 494

                                                                       
Query: 297 agcaggttcccacattagtaaactgttgggtagtttatcagacaccaccacatatctgat 356
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agtgggttcccacattagtaaactgttgggtagtttatcagacaccaccacatatctgat 554

                                                                       
Query: 357 gtggggaacaacggcttggcttggattaagtaaccagtccccttatctccgctacacttg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtggggaacaacggcttggcttggattaagtaaccagtccccttatctccgctacacttg 614

                                                                       
Query: 417 aatactcactttgacatacagtttcagtgggactttctgcttcaattaagagactcagtt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aatactcactttgacatacagtttcagtgggactttctgcttcaattaagagactcagtt 674

                    
Query: 477 tccccatgt 485
           |||||||||
Sbjct: 675 tccccatgt 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 883
Length adjustment: 10
Effective length of query: 475
Effective length of database: 873
Effective search space:   414675
Effective search space used:   414675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)