BAC Information

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BAC

Clone NameMSMg01-060A10
Chromosome15 (Build37)
Map Location 34,474,454 - 34,592,912
singlet/doubletdoublet
Overlap geneNpal2
Upstream genePgcp, Tspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1
Downstream geneKcns2, Stk3, Osr2, Vps13b, EG666183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060A10.T7 (MSMg01no060_a10.b1)MSMg01-060A10.TJ (MSMg01no060_a10.g1)
ACCAG286567AG286568
length691722
length of high quality
(start - end)
346 (75 - 420)416 (73 - 488)
definitionCHROMAT_FILE: MSMg01no060_a10.b1 PHD_FILE: MSMg01no060_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:40 2005CHROMAT_FILE: MSMg01no060_a10.g1 PHD_FILE: MSMg01no060_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,592,567 - 34,592,912)(34,474,454 - 34,474,869)
sequence
CTCCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTGTTCCGAGATGAACAGTTGATAAATGATAGATACTGA
GAAACTAGGATGGAATGAAAAATCCAACACATTAGTAAAAGGAGCTCCAG
ATAGAGACTACAGAGAGCAGATGAACAGCATTCAAAGAATTACTGATAAC
TTACAGCAGCACACAGAAAATCATAAATAGTTGTAGAAAAAAGAGTGCAA
GGAATAACAGAGAACATCTCAGCCTCTCAATGAAAATGACATTTCAAAGT
ATTTAATGAAATAATTGTCAACCCATGCATCTACATTCAGCAAGGCAGAT
GTTGTGAATATATTTACATGATTGCAGAGAATTAAGTTTCTAAAAAAAAG
TATTTTAAAAGCTGTTGGTACTTTCTCCAGAAAGGGCACTGAGAACATAA
CATCCCAAAAGTGGAGACAACTCCTATATTTACCAGCTGATGAATGGATA
AATGAAATGCGGTATATCTGTACACTGAACTATCACATAGCCTTACAAGA
TGTAAAGCGCCCGCTACCTTATAACTTAATGACCTTTGAAATCATTTATC
TACGGAAGAACTCCAACCCATCAGCCGCGAGTACTGCTCCCCCCTGGCCA
CGATGGCGTGACATGGCTTCCTGATCCTATAATCGCTCCCC
TGATCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATACAGGCTGATTATGATTGTTGTTC
AGGGTTTTACATTTTGGGGTGATTGGTTACACATAGTGACTTAACTAGTA
CAGGCAGGGACTTAGGTAGAATTACAGCTGCGCACCCTGCGAGAGCCACA
GGGTCTGAGTGTTTGTGCTCCATGCTGCTTCCAGTTCTGCCCCTTTGACA
GCATCAACATTGGCTCCCCATTCCCCATGCCTGGTGTCCCAAGCACTTCC
TGGCACCTGCCCCAGCACTGGGTAGGCACGGCAGCCAAGCAGCTCTGCTT
GCTCTTAGCACTCTTTCTTGGCTCTCAGGCCCAGCTGGTTTGGGTCTGGA
CCATAAGGTCACAGATGACTTTCCTCCTCTCAGGAGCTTCTTCATGACGA
GGANTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCCAGGGAAGGACTGA
GAGAGAGAGAGAGAGACTTTTCTGGCTGGGTGTTAAAGAAAAATGTCTTT
TATTTTATTCAATTATTTTTTTTGTGCTTATGTGCACAATGTTTTGCCTG
TATGCATTTATGTGCTCCAAATGCACTCCTGGTGGCTTTGGAGGCCCTTA
ACAGGTGAAGGGAATCCCCCTGGGAATGGAGGTCTAAAAGATTGGGAACC
GTCGAATGTTCTGTGTTCGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_a10.b1 MSMg01no060_a10.b1 CHROMAT_FILE:
MSMg01no060_a10.b1 PHD_FILE: MSMg01no060_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:40 2005
         (346 letters)



>mm_chr15_34592367_34593112
          Length = 746

 Score =  646 bits (334), Expect = 0.0
 Identities = 343/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagttgataaatgatagatactgagaaactaggatggaatgaaaaatccaacacatta 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aacagttggtaaatgatagatactgagaaactaggatggaatgaaaaatccaacacatta 487

                                                                       
Query: 61  gtaaaaggagctccagatagagactacagagagcagatgaacagcattcaaagaattact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 486 gtaaaaggagctccagatagagactacagagagcagatgaacagcattcaaagaattagt 427

                                                                       
Query: 121 gataacttacagcagcacacagaaaatcataaatagttgtagaaaaaagagtgcaaggaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 426 gataacttacagcagcacacagaaaatcataaatagttgtagaaaaaaaagtgcaaggaa 367

                                                                       
Query: 181 taacagagaacatctcagcctctcaatgaaaatgacatttcaaagtatttaatgaaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 taacagagaacatctcagcctctcaatgaaaatgacatttcaaagtatttaatgaaataa 307

                                                                       
Query: 241 ttgtcaacccatgcatctacattcagcaaggcagatgttgtgaatatatttacatgattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttgtcaacccatgcatctacattcagcaaggcagatgttgtgaatatatttacatgattg 247

                                                         
Query: 301 cagagaattaagtttctaaaaaaaagtattttaaaagctgttggta 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cagagaattaagtttctaaaaaaaagtattttaaaagctgttggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_a10.g1 MSMg01no060_a10.g1 CHROMAT_FILE:
MSMg01no060_a10.g1 PHD_FILE: MSMg01no060_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:40 2005
         (416 letters)



>mm_chr15_34474252_34475067
          Length = 816

 Score =  741 bits (383), Expect = 0.0
 Identities = 407/416 (97%), Gaps = 2/416 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   atacaggctgattatgattgttgttcagggttttacattttggggtgattggttacacat 62
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 203 atacaggctgattatgattgttgttcagggttttacagtttggggtgattggttacacat 262

                                                                       
Query: 63  agtgacttaactagtacaggcagggacttaggtagaattacagctgcgcaccctgcgaga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 agtgacttaactagtacaggcagggacttaggtagaattacagctgcgcaccctgggaga 322

                                                                       
Query: 123 gccacagggtctgagtgtttgtgctccatgctgcttccagttctgcccctttgacagcat 182
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 323 gccacagggtctgagtgtttgtgctccatgctgcttccagtcctgcccctttggcagcat 382

                                                                       
Query: 183 caacattggctccccattccccatgcctggtgtcccaagcacttcctggcacctgcccca 242
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cgacattggctccccattccccatgcctggtgtcccaagcacttcctggcacctgcccca 442

                                                                       
Query: 243 gcactgggtaggcacggcagccaagcagctctgcttgctcttagcactctttcttggctc 302
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcactgggtaggcacagcagccaagcagctctgcttgctcttagcactctttcttggctc 502

                                                                       
Query: 303 tcaggcccagctggtttgggtctggaccataaggtcacagatgactttcctcctctcagg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcaggcccagctggtttgggtctggaccataaggtcacagatgactttcctcctctcagg 562

                                                                   
Query: 363 agcttcttcatgacgagganttttttttttttttttttttttttttttt--ggcca 416
           ||||||||||||||||||| |||||||||||||||||||||||||||||  |||||
Sbjct: 563 agcttcttcatgacgaggattttttttttttttttttttttttttttttttggcca 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)