BAC Information

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BAC

Clone NameMSMg01-060H16
Chromosome15 (Build37)
Map Location 23,412,554 - 23,412,826
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545091, Cdh18
Downstream geneLOC624863, LOC666989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060H16.T7 (MSMg01no060_h16.b1)MSMg01-060H16.TJ (MSMg01no060_h16.g1)
ACCAG286913AG286914
length690681
length of high quality
(start - end)		274 (86 - 359)464 (69 - 532)
definitionCHROMAT_FILE: MSMg01no060_h16.b1 PHD_FILE: MSMg01no060_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:13 2005CHROMAT_FILE: MSMg01no060_h16.g1 PHD_FILE: MSMg01no060_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTCTTNNNATCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCTTCTGCTTTCCCGTCACTGAGTTGATTTTACT
CTTAGTCCACTCCCAGAGAATGGACACAGTTGGGCTTAACTTTTAGACCT
GCATTTTTCTTAATGAGTTATAAGCTGGTTAAGCTGTATGGGAGAGAAAA
TACAGTATGCATATACATACAAAAATTCTTAGATTATGTTAACTATTTCT
AAAAGGAAAATACCTATATTATGAAAGAAACTCAAGATATTTGTTAAATA
TCATAAATAATAAACATTACCCATCATGAAGAACAGATAATTTAACAACG
CATTATTGCTAGCATAGCGATAATAAATGCAAAGATAATTTTAAAAACAC
AACTATTAACATAAGTTATTTCTTCACTGACCACGATTATACAATGAGTG
TGTTGCACAGAAGCACAATTTTTAACTGAAAAAAATCATAAACTAAATTG
TGCCTTATGACAACTACATTTATCACTTTATAGACATGCTTTTGTATGCA
TAGGCATGTGTTCATGTGTGTGTACAGAGATCAGACGTCACCTTTGGACG
TAGGCCCTACTGCAGACACACAGTTTGCCTATGAAGATAGGCCCCTCCAC
TGCCCCGTAGCTCACCAACTATGCTCAACATGATGGGTCT

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGAAGCTAGCCTCCAAACTATCAAACAACAT
AATCAAAAATGGGGTATAGAACTAAACAGAGAATTTACAACAGAGGAATC
TCCAGTTGCTGAGAAGCACTTAAAGAAATGTTCAAAGTCCTTAGTCATCA
GGGAAATGCAAATCAAAATAAAAAGGACCTTGAGATTCTACTTCACACTA
ATAATAATGGCTAAGATAAAAAACACAGGTGACAGCTCATGTTGGTGAGG
ATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGTATTGCAAAGTGG
TACAACCACTCTGGAAATAAATCTGGAGGTTTCTCAGAAAATTGGAAATA
GATTTACCTGAACATCCAGCAATGCCTCTCTTGGGAATATACCCAAAAGA
TGCCCCACCATGCCACAGGGGCATGTGTTCCACTATGTTCTTAGCAGCCT
TATTTGTGATAGCCAAAAGCTGAAAACAATTCAGATGCCCCACAAGGGAA
GAATGGATACCGAAAATGGGATTTGTTTACACCATTGAATATTATTCCTG
CTACTACCAATAACAACACCATGAGTTTTGCCAACGGACCTAAAAAACAA
TATACATACCCTGACCGAGGCAACTCAGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_h16.b1 MSMg01no060_h16.b1 CHROMAT_FILE:
MSMg01no060_h16.b1 PHD_FILE: MSMg01no060_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:13 2005
         (274 letters)



>mm_chr15_23412354_23413027
          Length = 674

 Score =  497 bits (257), Expect = e-145
 Identities = 269/273 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagttgattttactcttagtccactcccagagaatggacacagttgggcttaactttta 60
           |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 201 tgagttgactttactcttagtccactcccagagaatgcacacagctgggcttaactttta 260

                                                                       
Query: 61  gacctgcatttttcttaatgagttataagctggttaagctgtatgggagagaaaatacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacctgcatttttcttaatgagttataagctggttaagctgtatgggagagaaaatacag 320

                                                                       
Query: 121 tatgcatatacatacaaaaattcttagattatgttaactatttctaaaaggaaaatacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgcatatacatacaaaaattcttagattatgttaactatttctaaaaggaaaatacct 380

                                                                       
Query: 181 atattatgaaagaaactcaagatatttgttaaatatcataaataataaacattacccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattatgaaagaaactcaagatatttgttaaatatcataaataataaacattacccatc 440

                                            
Query: 241 atgaagaacagataatttaacaacgcattattg 273
           ||||||||||||||||||||||| |||||||||
Sbjct: 441 atgaagaacagataatttaacaatgcattattg 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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