BAC Information

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BAC

Clone NameMSMg01-060I05
Chromosome15 (Build37)
Map Location 22,794,660 - 22,794,830
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040351, EG545091
Downstream geneCdh18, LOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060I05.T7 (MSMg01no060_i05.b1)MSMg01-060I05.TJ (MSMg01no060_i05.g1)
ACCAG286939AG286940
length718742
length of high quality
(start - end)
179 (47 - 225)69 (77 - 145)
definitionCHROMAT_FILE: MSMg01no060_i05.b1 PHD_FILE: MSMg01no060_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:15 2005CHROMAT_FILE: MSMg01no060_i05.g1 PHD_FILE: MSMg01no060_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCC
GCGGAATTCATACTGCTCTTCTCAACTAAAGCAAGAGATTTTTACTTCTG
GAAATTAATACATTTCCTATTTAAACCCTGTTCCAAATAATGTCAAACAT
AGAACTGTGAGTTTGAGCTGCAGTTACCATAGTTGTTATTGCTATCGATG
AGCATTGATATCGACTTTGCTGTCTAAAGGTATTGATTCTCATACACAGA
CCCCAGAAAATATGGTCACGAAGTTTGTTCTCATATATACTTTATGCACA
ATGACTGCAATTTTTTGTTATTTTAACTGGTTGTATCATTCATATAGACC
ATTATATTTTATAGTTAAATATTATTATTGTATTTTGAACAAATGGTATC
TTGTACTCATTCTAAGNTTACCCCATCTTATTTCTTGTGTATATTTGGAT
ATTATTTTGTTTCTGGCGTATTTTCTTTATTGTGTTTCCTGTTTTTTTTT
TTTTCTCTCACTTTCTGTTTGCTTTCTCGCTTTTTTTTGTGTTTTTCTGT
GTTTTTTTTTTCTTGCTTTCGTTCTTTTGTTGTTGTTTTGTTTCTGTCAC
TTCTTTCTTTCTCTTATGTTTTTTCTTTTTTTTGATTTTCGGTTTTTGTA
TGTTCCTTTTTTTTTTGTTACTCTTTGTTTTTTTTTTTTTGTTCCTGTTG
TGTTTGTTTTTTTATGTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATCTCCTAGTCATTGAATGTTTT
GGTTCTTCCATAATAAACATCCAAATGAGGATCAGGACTACAACATTAAT
ATAGTTAATATTTTAACCTGTTGATCGATTCTCTGTAAGTTGAGCTATAT
CAGCATTTCTTTGGAATTATCTGTTGTGATTTTGGAAGTGAATTAATTTA
TAGTGTTTCCATCATGAGGAATCTGCAACTCGCCATGAATGTTTATGTAT
GCATTATTCATTTTTCATACTGTTCCTGGTGCTTATTTTCTTATTTATTT
CTATTTACTACTATAATTATTTATGACTAATATAGTTCATACTCTCGTTG
TGTTTTAACCCCCCTTGATTTTACATAATTTATCTTGATCTCCTCCTACT
GTAGTTTGTTACTTTTTTTGTTTTTCTTTTTTTTTCTTTCTACTTTATTT
TCTTCTGCATACGTTCTTGAGATCTTTAACTTCCCTTACTTATGCCCTTG
TTACTCTTTGTTTTTCTTTCTTTTATTTCTCCTTTTATTTTTGTGTTTCG
ATTGGTTATTTCTCTCTATATATTGTAGGAATATTCCTTTTTTTTTTGTT
TTGTTTTTTTCTTAACTTGTGTTCGTAATTTATTGTTATTTTGTCTTTGG
TTCTCTCTACTTTTCCTTTCTCTGCTTTCTTTCCTCCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_i05.b1 MSMg01no060_i05.b1 CHROMAT_FILE:
MSMg01no060_i05.b1 PHD_FILE: MSMg01no060_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:15 2005
         (179 letters)



>mm_chr15_22794453_22795031
          Length = 579

 Score =  315 bits (163), Expect = 8e-91
 Identities = 169/171 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcatactgctcttctcaactaaagcaagagatttttacttctggaaattaatacat 67
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaattcatactgctattctcaactaaagcaagagatttttacttctggaaattaatacat 319

                                                                       
Query: 68  ttcctatttaaaccctgttccaaataatgtcaaacatagaactgtgagtttgagctgcag 127
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttcctatttaaaccatgttccaaataatgtcaaacatagaactgtgagtttgagctgcag 259

                                                              
Query: 128 ttaccatagttgttattgctatcgatgagcattgatatcgactttgctgtc 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttaccatagttgttattgctatcgatgagcattgatatcgactttgctgtc 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)