BAC Information

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BAC

Clone NameMSMg01-060L05
Chromosome15 (Build37)
Map Location 88,748,167 - 88,748,780
singlet/doubletsinglet
Overlap gene1700019P01Rik
Upstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3
Downstream geneMlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060L05.T7 (MSMg01no060_l05.b1)MSMg01-060L05.TJ (MSMg01no060_l05.g1)
ACCAG287083AG287084
length726758
length of high quality
(start - end)
621 (35 - 655)---
definitionCHROMAT_FILE: MSMg01no060_l05.b1 PHD_FILE: MSMg01no060_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:29 2005CHROMAT_FILE: MSMg01no060_l05.g1 PHD_FILE: MSMg01no060_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTTCTG
CTGACATATGTGGTCCATTCCCATCTGGTGCCCTGCAGACAGTCAGGGCT
TCCTCCATTCTTCTGTGATGCTGTGGCCTTGCTTTGCAGCTGTGTTCCTT
CCTGGGCTCTGGGCTCAGGCCCCTCCCCATCCTGAGACGTCTCTGTCTCC
CCTCACCGTCAGGCCATACCTTCCTCCCACTGAAGACTCCATTCTCAGGG
GCACTCTGTAGATTGTTCAGATGTGTGGGTCAAATGCCTGTGCTCTTGCC
TAGTACTGGTAGCCCTTGGTGACTTCCCAGGTGGCTTCAGCAGTTCCTTT
CATTTTAGGCAAGGTCTCAACTTGCCGTGACTAAATAAATGGAAGCCATG
TGCTTCGCGAGATCTATCTTCCCTTGTGCCCGTGGGACACTGCGACTGGA
AGCCTCTCTCTACTACCTTCTATCATCAGAATTGATGACCACACGTCCTG
TGGAACGGTCCCCCCAAATCTCAGCAGAAACTTGTGTCCTTGGGCAGCTT
GCAAGGGTGCTCTGCCTATCTTGTGGCCTCGCTCTTGCCCTACATTGTCA
TGGCAGGAGAAAGTGAGCAGCAGGCTCTGTCACTGACATTAACCCCAACA
CAGCTCANAACGAAACATTTGGCTCCTTCTTGCCTGCCTCACAAGTCGGG
CAGACCTACTTTAGGGGCAAGGTTGG
CCATCAAACCATTNNTATAGATGATAGTGCGTAGGCCTGGNGGACGCCTG
TTTTTTCACACTTAGGCCGAACTATAGAATTTTCCCACAAAATTGTAGGN
NTTTTGATCTGCTTTTAGTAACTGCGTCGGTCTCTCATGAGAAATTGGCG
CTTTCTAGCAAAAGTGGTTTTAAAATACCTGGCTAATAGCACCGGACTTT
CTTTTTCTAATTATATTCTTAAATTCTATTCTATTACTCGTGTATGTCAC
ACCTTCTCCCAAGATATGTTCTTTGCACAATCTCGTTTTCTTCCTCCCAC
TCTTTATATTCCTTCTCAGGTATCCAACTTTCGTCGTTAGGTATTCTATG
GTAAGTATCTTCTACCTGCCACCACTCTACCACTCTACCCCTGCCATTTT
TCTTTCACATTCTTCGCTTCATCTATACCCCCCTCCTCTTCCCCCGCTGT
TATTCCCCCCCCCGTTACTTACTATTGCCCCCCAAACCCTCTACCACTAA
GCCCAACCTATATTCTAACGCCACCTCTTACTAAATACCTCGAAACCGCC
CCTTCCCGCACTCCCTTCTCATTCTGCAATGACCATCGCCCCCTTGCCTC
CGTTGCCGAACCTTTCCTTTTTCCTCTTCTCCTTTTCGACCTTATCTCCC
CTTATCCCCCCCTGCTCACCTCTCCTGTCTTCCCATTACCCCACCTTTCC
CCACATTACTACGCCACGCTTCTATCATCTTACCTTCATATCAATCATTC
CCTATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_l05.b1 MSMg01no060_l05.b1 CHROMAT_FILE:
MSMg01no060_l05.b1 PHD_FILE: MSMg01no060_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:29 2005
         (621 letters)



>mm_chr15_88747962_88748980
          Length = 1019

 Score = 1062 bits (549), Expect = 0.0
 Identities = 599/617 (97%), Gaps = 4/617 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttctgctg-acatatgtggtccattcccatctggtgccctgcagacagtcaggg 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gaattcttctgctgaatatatgtggtccattcccatctggtgccctgcagacagtcaggg 760

                                                                       
Query: 65  cttcctccattcttctgtgatgctgtggccttgctttgcagctgtgttccttcctgggct 124
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 759 cttcctccattcttctgtgatgctgcagccttgctttgcagctgtgttccttcctgggct 700

                                                                       
Query: 125 ctgggctcaggcccctccccatcctgagacgtctctgtctcccctcaccgtcaggccata 184
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 699 ctgggctcaggcccctccccatcctgagaagtctctgtctcccctcactgtcaggccata 640

                                                                       
Query: 185 ccttcctcccactgaagactccattctcaggggcactctgtagattgttcagatgtgtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ccttcctcccactgaagactccattctcaggggcactctgtagattgttcagatgtgtgg 580

                                                                       
Query: 245 gtcaaatgcctgtgctcttgcctagtactggtagcccttggtgacttcccaggtggcttc 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 579 gtcaaatgcctgtgctcttgcctagtactggtagcccttggtgacctcccaggtggcttc 520

                                                                       
Query: 305 agcagttcctttcattttaggcaaggtctcaacttgccgtgactaaataaatggaagcca 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agcagttcgtttcattttaggcaaggtctcaacttgccgtgactaaataaatggaagcca 460

                                                                       
Query: 365 tgtgcttcgcgagatctatcttcccttgtgcccgtgggacactgcgactggaagcctctc 424
           ||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 459 tgtgctttgtgagatctatcttcccttgtgcccgtgggatactgcggctggaagcctctc 400

                                                                       
Query: 425 tctactaccttctatcatcagaattgatgaccacacgtcctgtggaacggtccccccaaa 484
           |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tctac---cttctatcatcagaattgatgaccacacgtcctgtggaacggtccccccaaa 343

                                                                       
Query: 485 tctcagcagaaacttgtgtccttgggcagcttgcaagggtgctctgcctatcttgtggcc 544
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tctcagcagaaacttgtgtccctgggcagcttgcaagggtgctctgcctatcttgtggcc 283

                                                                       
Query: 545 tcgctcttgccctacattgtcatggcaggagaaagtgagcagcaggctctgtcactgaca 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 282 tcgctcttgccctacattgtcatggcaggagaaagtgagcagcaggctctgtcattaaca 223

                            
Query: 605 ttaaccccaacacagct 621
           |||||||||||||||||
Sbjct: 222 ttaaccccaacacagct 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1019
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1009
Effective search space:   616499
Effective search space used:   616499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)