BAC Information

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BAC

Clone NameMSMg01-060O06
Chromosome15 (Build37)
Map Location 95,104,199 - 95,104,392
singlet/doubletsinglet
Overlap geneNell2
Upstream geneAdamts20, Pus7l, Irak4, Twf1, Tmem117, LOC100043315
Downstream geneDbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060O06.T7 (MSMg01no060_o06.b1)MSMg01-060O06.TJ (MSMg01no060_o06.g1)
ACCAG287229AG287230
length744814
length of high quality
(start - end)
158 (71 - 228)194 (75 - 268)
definitionCHROMAT_FILE: MSMg01no060_o06.b1 PHD_FILE: MSMg01no060_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:43 2005CHROMAT_FILE: MSMg01no060_o06.g1 PHD_FILE: MSMg01no060_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTGTCGGCGCTATACGACTCACTATTTCAAGAGGATCCGCGGAATTC
TTTGTTCTTTCCTAGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTACGATAGGTAAAGATCCTTTCCCAATCTGTTGGCGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGG
CCCCATTTGTCTATTCCTGATCTTACCTCACACGCCATTGCTGCTCTATT
CTGGAATTTTTCCCCTGTGCCCATATCTCTCAGGCTTTTCCCCACCTTCT
CCTCTATTATTTTCAGTGCCCCTGGTCTTATGTGAAGCTCCCTGCTCCCC
CTGTATTCGCCCTTCTCCCCTCCATAACTCCACATGCCTCTTTTCTCTCT
TCTTCTATCTGCTCCCCTCCCTTTTCTCCTTTCCCCCTTTCGCTCCACTT
TCCTTTCTTTCTTCATCTCCCACCCTTTTTCTTTCCCCCCCTTCACTCTC
TTCCTCCCCTCTCTTTTGTCTGTCCGTTTTTTCGCCCTTTCCCCCCTTGT
TCCTCTCCGTCTCATCTTCCCCCTCCCTTTTCTTCTCTTCTCCTCTTCTC
TCCTCCCTCCCCTCTCCTCTCTTTTCTTCTCTTCCCCCCCTTCTCCACTT
TTACCCTTTCTCTCTCTCTCCCCCTTATCCATCTTCGCCTCTTT
ATGAAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAAATGTATATCCCATTTGGTTGAGA
AAGCTACCTGTGTAGCTCAGGACGTTAGGATTCTTGAGATACAAGCACAC
AGACGTTTGGTACTTTGCTTGGTGCTGGTTTTAACTAGCACACTCTAGGA
ATAGAATATTAAAAGGCACTTGCCTGGGAGTAAGGTAGTGATGATGATGG
TGTAGGCGTTGGTGATGAGGATGATGTCCCTCTTTCCCCCTGTTTGTTTC
CTCCCCCTTTCCTTCTTCTTTTTTTTCCCTCTCCCTGTTCTCCATCTACC
CCTATACGACCCCCCTCCCCCTTTTCTCTTAGCCCCTTTCTTCCCCTCCC
TATTCCCCTCTTTCCCGCTTTTCACTTCCCCTCTCCCCCTCCCCCTTTCC
CTTTCCCTGGCCCTTTCCCGCCCCCCCTATCCCCACCCGCTCCCCCTTAT
CCTCCCTCCCCCCCCCCCTCCTTCTCTTTCTTTTCGCTCCCTTCCCCCCC
CCATTTCAATTCTGTTCTCCCCCCCCCACCCTTCCCTGATTCTCTCCCCC
CCTCAATCCCCGCCCCCCGCCTCCCCCCGAATTATTCCCACCCCCTCTCC
CCATCCTTTTCACCTCGCTCTCACCTTTCGGTTTTCTTCCCCTTGTGGCC
CCGCGCGCCGGGGCCTGGGGGTCTTCTTTTTTACCCCCCATCCCCGCTGT
CGCCAGTCGGTTGGAACTTGTCCGGCCGACAGCCACCACCCCCTCCTTCT
CCTCCTTCCACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_o06.g1 MSMg01no060_o06.g1 CHROMAT_FILE:
MSMg01no060_o06.g1 PHD_FILE: MSMg01no060_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:43 2005
         (194 letters)



>mm_chr15_95103999_95104592
          Length = 594

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatgtatatcccatttggttgagaaagctacctgtgtagctcaggacgttaggattct 60
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 394 aaaatgtatatcccatttggttgagaaagctagctctgtagctcaggacgttaggattct 335

                                                                       
Query: 61  tgagatacaagcacacagacgtttggtactttgcttggtgctggttttaactagcacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgagatacaagcacacagacgtttggtactttgcttggtgctggttttaactagcacact 275

                                                                       
Query: 121 ctaggaatagaatattaaaaggcacttgcctgggagtaaggtagtgatgatgatggtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctaggaatagaatattaaaaggcacttgcctgggagtaaggtagtgatgatgatggtgta 215

                         
Query: 181 ggcgttggtgatga 194
           ||| ||||||||||
Sbjct: 214 ggcattggtgatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)