BAC Information

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BAC

Clone NameMSMg01-060P10
Chromosome15 (Build37)
Map Location 81,637,199 - 81,637,465
singlet/doubletsinglet
Overlap geneTef
Upstream geneTnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b
Downstream geneLOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060P10.T7 (MSMg01no060_p10.b1)MSMg01-060P10.TJ (MSMg01no060_p10.g1)
ACCAG287285AG287286
length700723
length of high quality
(start - end)
269 (85 - 353)123 (72 - 194)
definitionCHROMAT_FILE: MSMg01no060_p10.b1 PHD_FILE: MSMg01no060_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:49 2005CHROMAT_FILE: MSMg01no060_p10.g1 PHD_FILE: MSMg01no060_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGTAGCTTCCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCCTGGTTTCCGAAACCATGTGGTATTTCTTGG
TCATCTAGTTACTCATTATAGCCTAGTGAGCATTTGCTATAGCCTTGTGG
CTCAGGCGTGGACGAGAGAAACACTGTCCTTGCTTAACTAGAATTGGCAA
CCTAGTGAGGAAAGAAAGCAATTATTAGTCCAGCTGGCCTTTCCATGGGG
AGACAGTAGTTGGGCCCTATAGCCTGCACCTATTTCTGTATCACCAACAG
AACTTCAGCTAGGGAAACCAAGCTGTCAGGTGGTGCCAAACATTGATCAG
GCCGCCTGTAGCGGGCAAGGTTGTTCTCCATAATCATGGTACTGTTGGGG
CAGACTCTTGAGAGTACTGAAGGCAGACCCACCAATTTAAAAAGAGGTCC
CACCTACCACTTCTACCCTAGAACACATTCAGACCAAAGTACAAAGTACA
GAGCCTCAGTTTCCCAGCCCCAGGTATGCGCCCCTCCCACCAGACTTACA
CGCTGGCAAGGCTGGCGCTGCGGACCTGCCAAAGAATGGCTAGTGCTTGC
TCCTCCAGATTCCCCCCAATATCCCCCCACTGACTGCTAGTTCCATATTC
ACCTACCCTCTACATCGCTCACACTTGCGTTCTCAAAAATCTTCTATTCN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGAGATCCTCCTGCCTCTGCATCCTGT
TTGGATGAAAGGTGTGTGCCATCAACGCCCAGCCCAAAATGCCTTATTTT
TTTTTCTCCTCATTTTTTTTTGGTGGGGGAGGGGGTGTTCTGCATACCCT
CGACTACCTTGTACTCTCCCGCACCACCTCAACCCTCTTCATCCCACCCA
CTTCCCTACCTCCCCCCCCCCCCCACCCCCCCCCCTCACCACACGCCCCC
CACACCCCTCTCGCACTCTTCTCTTCCCCCCCCCCCATACCCCACCACCC
CCACCCTTTTTTTACCCTCCCCCCCCCCACCGCACCGTCATACCCATCCA
CACCCTCCACCCCCCCCCCCCCACCAACACCAAACCATCACCCCCCCCCT
CACCCACTCCACCCACACCCCCCCTCCCCCTCCACCCCCCGCCCCCCCAC
CATCCCATCTCTTAATCCAACTCCCTCCCTCCCCCTCCCTCCTCCCCCTC
CCCCACCACTCCCCATACCCCCCCCACCCTACCCCCACCTATTCGCCACC
CCATTCCCCATCTATACCCCCCCACCTACCCCCCCCCCTCCGCCCCCCCC
ACCCCAACTCCCACCCTTCCCCCCCCTTCCTCCTCCCTCCTCCCACCCCC
TTCCCCCCCCCTTCTTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_p10.b1 MSMg01no060_p10.b1 CHROMAT_FILE:
MSMg01no060_p10.b1 PHD_FILE: MSMg01no060_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:49 2005
         (269 letters)



>mm_chr15_81636999_81637665
          Length = 667

 Score =  489 bits (253), Expect = e-143
 Identities = 265/269 (98%), Gaps = 2/269 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtggtatttcttggtcatctagttactcattatagcctagtgagcatttgctatagcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 201 atgtggtatttcttggtcatctagttactcattatagcctagtgagcatttgctat-g-c 258

                                                                       
Query: 61  ttgtggctcaggcgtggacgagagaaacactgtccttgcttaactagaattggcaaccta 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttgtggctcaggcgtggatgagagaaacactgtccttgcttaactagaattggcaaccta 318

                                                                       
Query: 121 gtgaggaaagaaagcaattattagtccagctggcctttccatggggagacagtagttggg 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 gtgaggaaagaaagcaattattagtccagctggcctttccaaggggagacagtagttggg 378

                                                                       
Query: 181 ccctatagcctgcacctatttctgtatcaccaacagaacttcagctagggaaaccaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccctatagcctgcacctatttctgtatcaccaacagaacttcagctagggaaaccaagct 438

                                        
Query: 241 gtcaggtggtgccaaacattgatcaggcc 269
           |||||||||||||||||||||||||||||
Sbjct: 439 gtcaggtggtgccaaacattgatcaggcc 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 667
Length adjustment: 9
Effective length of query: 260
Effective length of database: 658
Effective search space:   171080
Effective search space used:   171080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)