BAC Information

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BAC

Clone NameMSMg01-061M03
Chromosome15 (Build37)
Map Location 92,469,285 - 92,469,451
singlet/doubletsinglet
Overlap genePdzrn4
Upstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061M03.T7 (MSMg01no061_m03.b1)MSMg01-061M03.TJ (MSMg01no061_m03.g1)
ACCAG287892AG287893
length756771
length of high quality
(start - end)
167 (124 - 290)---
definitionCHROMAT_FILE: MSMg01no061_m03.b1 PHD_FILE: MSMg01no061_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:49 2005CHROMAT_FILE: MSMg01no061_m03.g1 PHD_FILE: MSMg01no061_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGGTTATCCCTTGCTAAGCATCTGGTGATTTATTTCATGCTGCA
GTTTCTTGGGGGGCGGGGGGTGGAAAGTCCAGATTCTATTTGAAGAAGAT
GGTGTTGAAAGCTCAGTCTCCCCAAGAAAGAGAAACATCGATGTCGGAGG
GAGCTGATTTCTCCACTTTCTTCCTGAGAGACTCAGCAATGTCAGCTGAA
TTGTTTTTATGCAGTCAGTCCTGTTTATTGAACACCTACTAGACACCATA
GTCCAGCACTGGGTGTTAAGGATTTCAATGGGAAAGAGAGGTTAAAAATT
ATGTCTACTGAGGAGAAATAGGCACAAGAACACACTATCAAGATGCGAGC
ACATCTAAATCATGATGGCAATTGCAACTATTTATAGCCACAGCTTACCG
GATGTGACTACTTACAAGTGCATTTTCCACATTGCATGAGAAATTTGCCT
CTCAACACTTCTTTCCAGTGTATTTCTGTTTGTTTTCGGTTTTGTTGTTG
TTTTTAACATTATATGATGGCCTCGGTGACTCCAGAATTTCCCTGGCTTA
AAGGAAATGGGGTATGCTGGCCCCCTTTCGCACTTTCCCCGACCTAACCT
TACTCTCCGTATTCCGCTTTTCCTTTAACTATTGCCTCATTTACTTATTC
ATGGTATATTTCCTCCCTCCCCCCGGTTAACAAGGCGCTCCCACATTTCC
TCTTCC
CATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCACGACACTTAGTTATAACGATATTGTA
ACAATCGTCACTATTGCTCACAAGCTGTAGTTTTATTAATGTGACATATC
AGCTTTTTATAAGGAGCTTATAGGCACCCATCCTATTTTTAGATTAATAT
TAAGTGTGTGTGCTTGTCTGTCAGTGTGAATGTACCGTGTGTGCTCATAT
AGGTGACCATGCCTGTGAGCATGCATGTGTGTGCGTGTTTGATGAGAGAT
TTTACCCAACACATCAATTGTTATGTACATAACCACGCCCCCCTTCTGAA
TTCTCTCTTACTCTCCTTTCCCCCCCCTTACAATCCCACACCCCTGTTAT
TAAATTTCCCTATTATTGCCCCACTTTGTCGTTCTCCGGTCTTATCACCC
TCGGGGTTACCTAATGTTCATTGTCCTTAAGAGTCTTTCCCAAGTCCACT
GCGCAAGATATTTTTCAATCACTACAAACACGTATTGTTTCTTTTCGAAC
TTTTATCTAGCCCAATATTTACCCCTTTTAATCCTATATGAGATGGCCCT
CCCACGACTCTTATCTCCAGAACTTCAGTCCCAGGGAGTTTTAATTACCA
CCAATATTTCTTTTGTAGGTTACCCTTAATCAATTAAACCCCTTCGCTTG
TTTTATTCCTAACGTAGAAAAGAATTGTTCATAACCCACCCCTTGTGGAT
CCCCGCATTCCTCCGTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_m03.b1 MSMg01no061_m03.b1 CHROMAT_FILE:
MSMg01no061_m03.b1 PHD_FILE: MSMg01no061_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:49 2005
         (167 letters)



>mm_chr15_92469085_92469651
          Length = 567

 Score =  308 bits (159), Expect = 2e-88
 Identities = 165/167 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagtccagattctatttgaagaagatggtgttgaaagctcagtctccccaagaaagaga 60
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 367 aaagtccagattctatttgaagaagttggcgttgaaagctcagtctccccaagaaagaga 308

                                                                       
Query: 61  aacatcgatgtcggagggagctgatttctccactttcttcctgagagactcagcaatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aacatcgatgtcggagggagctgatttctccactttcttcctgagagactcagcaatgtc 248

                                                          
Query: 121 agctgaattgtttttatgcagtcagtcctgtttattgaacacctact 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agctgaattgtttttatgcagtcagtcctgtttattgaacacctact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)