Query= MSMg01no062_f19.b1 MSMg01no062_f19.b1 CHROMAT_FILE:
MSMg01no062_f19.b1 PHD_FILE: MSMg01no062_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:52 2005
(702 letters)
>mm_chr15_66532394_66533495
Length = 1102
Score = 1276 bits (660), Expect = 0.0
Identities = 687/696 (98%), Gaps = 2/696 (0%)
Strand = Plus / Minus
Query: 1 agagagtgaacaaacatgtcctgag-aaccctcagcaaagcttcttctcctgttatccct 59
|||||||||||| |||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 695 agagagtgaacagacatgtcctgagaaaaccacagcaaagcttcttctcctgttatccct 636
Query: 60 agcagcaccagttcccagggtcagaatgaccatgtccatacaatttacaagaaagggaag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agcagcaccagttcccagggtcagaatgaccatgtccatacaatttacaagaaagggaag 576
Query: 120 ctcctctcacccaagccactgcacaaccaagaatcacttacatcagacctcagagatgac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctcctctcacccaagccactgcacaaccaagaatcacttacatcagacctcagagatgac 516
Query: 180 agagaaaaaaaacctgcttcatctccccaggacaatgttctgccttgtagctccacagct 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agag-aaaaaaacctgcttcatctccccaggacaatgttctgccttgtagctccacagct 457
Query: 240 ttcacagctgtgttccagatgtgttttagaaggagaaaagccaagaaggagaagcctgaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttcacagctgtgttccagatgtgttttagaaggagaaaagccaagaaggagaagcctgaa 397
Query: 300 tcttagatggtatgatttcactagcactccccttttgagaagggagaggtgtgatgcaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tcttagatggtatgatttcactagcactccccttttgagaagggagaggtgtgatgcaca 337
Query: 360 gggtgggaccaaagctctggaagcagatagagccaagatcacatgtctgcactgccaact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gggtgggaccaaagctctggaagcagatagagccaagatcacatgtctgcactgccaact 277
Query: 420 aaaatcaggggtactcactgagggttggtcacaggcagagcggtgtactctacatcgtgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaatcaggggtactcactgagggttggtcacaggcagagcggtgtactctacatcgtgg 217
Query: 480 agttcaggacttttaggggaggacaaatgacctccgtggttccagggacaaaaagctgct 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 agttcaggatttttaggggaggacaaatgacctccgtggttccagggacaaaaagctgct 157
Query: 540 ggtgccaggactcaagtccaggcatgtctgattctaaaggccatgtcctaagtgtatata 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 156 ggtgccaggactcaagtccaggcacgtctgattctaaaggccatgtcctaagtgtatata 97
Query: 600 gagctgtatgcctcagcttccaaagcttgctcacaggagagagtgggggaaacacccagc 659
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 96 gagctgtatgcctcagcttccaaagcttgctcacaggagggagtgggggaaacacccagc 37
Query: 660 tctacagaaacgccagcaagtttccatacatacaag 695
|||||||||||| |||||||||||||||||||||||
Sbjct: 36 tctacagaaacgtcagcaagtttccatacatacaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_f19.g1 MSMg01no062_f19.g1 CHROMAT_FILE:
MSMg01no062_f19.g1 PHD_FILE: MSMg01no062_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:52 2005
(474 letters)
>mm_chr15_66410177_66411050
Length = 874
Score = 851 bits (440), Expect = 0.0
Identities = 468/486 (96%), Gaps = 17/486 (3%)
Strand = Plus / Plus
Query: 1 aagatttttcgtttgtgtggggatttttcatttgtgtggggttt-tttttttttttttta 59
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 194 aagatttttcgtttgtgtggggatttttcatttgtgtggtgtttatttttttttttttta 253
Query: 60 agctagaaagatcctagtgagtagtaatgtaagaacatgttctaagcatctccctccaac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agctagaaagatcctagtgagtagtaatgtaagaacatgttctaagcatctccctccaac 313
Query: 120 aagagcagcgttagattcctggtccccaacccgttgtattttgataagaccgtgcttgcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aagagcagcgttagattcctggtccccaacccgttgtattttgataagaccgtgcttgcc 373
Query: 180 agttattattttcattccactattgataccttgagaatatatgcattctcttcaaatact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agttattattttcattccactattgataccttgagaatatatgcattctcttcaaatact 433
Query: 240 cggtagtcaaaaaggctgcacgtgtgctaggcttttta-----gtgtggccaaaagatca 294
|||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 434 cggtagtcaaaaaggctgcacgtgtgctaggc-----aagccagtgtggccaaaagatca 488
Query: 295 ttaaatacttaatgtaaatgggctatagtgaagtatagtgaagtaacgactcctgcaggt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttaaatacttaatgtaaatgggctatagtgaagtatagtgaagtaacgactcctgcaggt 548
Query: 355 ttttttttttttttt------aattgtcattatgggcacaatgttgagttaataatagaa 408
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttttttttttttttttttttaattgtcattatgggcacaatgttgagttaataatagaa 608
Query: 409 accttacccagagtctggcataatttgattatgaaatgtgaaatttaagaaaaatcactt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 accttacccagagtctggcataatttgattatgaaatgtgaaatttaagaaaaatcactt 668
Query: 469 gaagcc 474
||||||
Sbjct: 669 gaagcc 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
