BAC Information

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BAC

Clone NameMSMg01-063A05
Chromosome15 (Build37)
Map Location 98,056,797 - 98,057,082
singlet/doubletsinglet
Overlap genenone
Upstream geneAmigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104
Downstream geneEG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063A05.T7 (MSMg01no063_a05.b1)MSMg01-063A05.TJ (MSMg01no063_a05.g1)
ACCAG288852AG288853
length748683
length of high quality
(start - end)
60 (90 - 149)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no063_a05.b1 PHD_FILE: MSMg01no063_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:12 2005CHROMAT_FILE: MSMg01no063_a05.g1 PHD_FILE: MSMg01no063_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAAGGATCCG
CGNAATTCACTCTGTACACCANGCTGGCCTCCAACTCANAAATCCGCCTG
CCTCTGCCTCCCAAGTGCTGNNATTAAAGGCGTGCGTCACCACTGCCCGN
CCAGNGCACTTAGTTATGATAATAAATCAATCTTTTGNCNNANANANCAA
AAACTAAACCTNCCNNNNTGGCCANGGNAAACCAAAGGCCTAAATTGGGC
NCTNNNNNNNNNNNNNNNNNNNNTNTTTANCGTGTGTTGGTTTTGGGGGT
GTGTTGGGCGGCCCCGGNNTTNNNNNNNNNNNNNNNNNNNNNACCCCANC
CCACCACATTATTTTTTTGTCTGCCCCCCCTCCCCCCNNNCCCCTATCAC
TGTTTTGTTGGTTNCNNTCCNNNNNNANANACCAACCGCTGGGGGTGGGC
GGGGGGGGGGTCTNNNNNNNNNCNNNNCNNCNCNNCCCACAAAACCTGGT
GGGGCGTGTGTGGGTCCCNCCTNNNNCNNNCNCNNNCCCCCCCACCCNCC
CCCCCCCCCCNCACCCCCCACACACCAACCCCCCNCNNACNAATATCTCC
TCTGGTTGGTAGGTGGGGTGTTNTNCCANNNCCCCCACCATCTTTTTTTT
GTTCGTGTCCAAAAAACTTNCCNNNCNNNANNNNNANNNNNNAACCCTCT
CCCAACACACCACATTAAATTTTTCTTTACTCTGGGGGTTGTGTTTGT
CGATGAAGTGCTAGCCTGGCGCCGCCTGTTTCCGAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACCTACTGGAAATAGATGCTTATCCCCTT
TCTAGCCTTAATTCCCAATGCTGGAGGGCTCCAAGAAAGACATTCATGTC
TTCCTTGACACCAGACTCAGACCTTGTAGTAATTTCTCCTGATGTCTAAG
GCTCATATCTTGAGTTGGCTTCCAGCAAAAACTGAGCCTCTCTGATTTCT
CTTGGTAATCGCTTTTCATGATTTGAGGGACAAATGCGATGTTATCGGAC
TTATGTCAGTCACTAACTGAGAAGAGTCAGGCATGCTTTACAAGATAAAG
CAATTATCTTAGGCTTACCTAGGCTTCTATTCCTGTGAAGAGACACCAGT
GATCACTGTGACTCTTACAAAGGAAAACGATTAACTAGGGCTGGGTTGCG
ATTCAGAGTTTTGTTCTATTATTGTCACAACAGAAAAGCATCACAACCCG
CAGGCAGATGTGGTGCTGGAGAAGGAACGCAGTGTTCTACACCCGGATCG
GCAGGCAGCAGGAAGAGAATTAGCTTGAGCATGGAGATCTCAAGGCACGA
ATAGTTTTTATGTGCTAGCATACTAGCCATTGTGGGTATGAGTAGAACGA
ACGAAAAAAAACAGAAAGAAGGAAGGAAATGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_a05.g1 MSMg01no063_a05.g1 CHROMAT_FILE:
MSMg01no063_a05.g1 PHD_FILE: MSMg01no063_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:12 2005
         (287 letters)



>mm_chr15_98056597_98057283
          Length = 687

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacctactggaaatagatgcttatcccctttctagccttaattcccaatgctggagggct 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 486 aacctactggaaatagatgcttatcccctttctagcctttattcccaatgctggagggct 427

                                                                       
Query: 61  ccaagaaagacattcatgtcttccttgacaccagactcagaccttgtagtaatttctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ccaagaaagacattcatgtcttccttgacaccagactcagaccttgtagtaatttctcct 367

                                                                       
Query: 121 gatgtctaaggctcatatcttgagttggcttccagcaaaaactgagcctctctgatttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gatgtctaaggctcatatcttgagttggcttccagcaaaaactgagcctctctgatttct 307

                                                                       
Query: 181 cttggtaatcgcttttcatgatttgagggacaaatgcgatgttatcggacttatgtcagt 240
           ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct: 306 cttggtaatcgcttttcatgatttgagggaccaatgcgatgttataggacttatggcagt 247

                                                         
Query: 241 cactaactgagaagagtcaggcatgctttacaagataaagcaatta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cactaactgagaagagtcaggcatgctttacaagataaagcaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)