BAC Information

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BAC

Clone NameMSMg01-063E23
Chromosome15 (Build37)
Map Location 58,469,372 - 58,469,657
singlet/doubletsinglet
Overlap geneEG631797
Upstream geneZhx2, Derl1, Wdr67, BC030396, 9130401M01Rik, Zhx1, Atad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e
Downstream geneTmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063E23.T7 (MSMg01no063_e23.b1)MSMg01-063E23.TJ (MSMg01no063_e23.g1)
ACCAG289080AG289081
length748668
length of high quality
(start - end)
---289 (55 - 343)
definitionCHROMAT_FILE: MSMg01no063_e23.b1 PHD_FILE: MSMg01no063_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:37 2005CHROMAT_FILE: MSMg01no063_e23.g1 PHD_FILE: MSMg01no063_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGAGTTTCTTTGTGAGCTTCACAGAGTCTAACTTTAACAATTTTCTA
TGAACTATTATTGACGCAACCTACCCAGAAAGATGGTGGGAGAGAGAGGG
TGGCTGGTGGCGCCATGGCAGGGCACCTTTTTTCCCCTCCTCTCTTCCCC
TTCCTCCCCCCCTCCTTTTCTTCCTCCCCCCCCCCCCCTTCTTCCTTCTT
CCCCTCCTCCCCCTTCCCTTCCCCCCTGTCCCTCTCCTCCCTCCGTTCCC
CTTCCTCCCCCCTTTCTTTTTCCCTCCCTTCCCCCTCTTCCCCTTTCTCT
CTTTTTGTGNTCTTCCCCCTCCGCCCCCTTCTTTTTTTTCTTTTCTCTTT
TTTTTCTTCCTCCCCCCCCCCCCCACCTCCATCTCCTTTCCCTCTCTTTT
CCCCCCTTCCCTTTCCCTCTCCTTTCCCCTCCTTCCCCCCCCCTCTCCTC
TCTTTCTCCCTCCTTCCCCCTCCTCCCCTCCTCTCTTCCCCCTTTTCTTT
TCCCTCCCTCTCCTTCCCCCCTCTTTTCTCTTTCTTCCCTCCCCTCCCTT
CCTCTTTTCTTTCTCTTTTCCCTCTTCTCCTTCTCCCCCTTCTCTCTCCC
CTCTCCTTCTTTTCCTCCTCCCTCCCCTTCTTCTTTTTTTTCCCTTCTCC
TCCTCTCCCTTTTTCCCCCCTCCTCCCTTCCTCCCTTCCTCCCTCCTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGTCGATCCAGTCAGCGTGTGGACCACGAAGTGCTAACCAAAAGGA
AGCTGGTGATGTCCCATGCTGCCAGACCTTGCTAATTCCCAGCCCTCTTC
TTGAATTCAGGTCATTTGAGATCCAGGCCACTTTCCCAAAGGAGTCCCTG
CTCTCTGTCCTGATTTATGACCATGACATGATCGGGTCAGATGACCTCAT
TGGAGAGACCAAGATCGACCTGGAGAACCGTTTCTACAGCAAACACAGAG
CCATCTGCGGCTTGCAGAGCCAGTATGAGATGTAAGTTGTTTTCTGTGGA
CACACTGCTGGTGTCTCAGGAACGCAGCCTTGTGGAGCTCTGGACTGCGC
ATGCATACATGCTCTTGAGGGGCAATGAGGCTGGCGAAGCAACTTTGGTT
TAAAACTCAGGGCCGGTTCTTCAAGAACTAACAGTCAGGCTGCGGCGTGC
TTGTGCATTCACTTGCGTCTGGTGGCCAGGATTCCCGGTACGGGTCGCGA
GGGGCGGCTGGTGCTAGATGAGCAATGGTTATTACCGTGCATACATCTCG
AAAGCATCGCGAACATCGTCTGTGTTCTGGACTTGTGTAAACAACATCTG
TATGCGCTTAAGACTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_e23.g1 MSMg01no063_e23.g1 CHROMAT_FILE:
MSMg01no063_e23.g1 PHD_FILE: MSMg01no063_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:37 2005
         (289 letters)



>mm_chr15_58469172_58469860
          Length = 689

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcgatccagtcagcgtgtggaccacgaagtgctaaccaaaaggaagctggtgatgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcgatccagtcagcgtgtggaccacgaagtgctaaccaaaaggaagctggtgatgtcc 260

                                                                       
Query: 61  catgctgccagaccttgctaattcccagccctcttcttgaattcaggtcatttgagatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgctgccagaccttgctaattcccagccctcttcttgaattcaggtcatttgagatcc 320

                                                                       
Query: 121 aggccactttcccaaaggagtccctgctctctgtcctgatttatgaccatgacatgatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggccactttcccaaaggagtccctgctctctgtcctgatttatgaccatgacatgatcg 380

                                                                       
Query: 181 ggtcagatgacctcattggagagaccaagatcgacctggagaaccgtttctacagcaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcagatgacctcattggagagaccaagatcgacctggagaaccgtttctacagcaaac 440

                                                         
Query: 241 acagagccatctgcggcttgcagagccagtatgagatgtaagttgt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagagccatctgcggcttgcagagccagtatgagatgtaagttgt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)