BAC Information

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BAC

Clone NameMSMg01-063N06
Chromosome15 (Build37)
Map Location 49,024,835 - 49,025,244
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063N06.T7 (MSMg01no063_n06.b1)MSMg01-063N06.TJ (MSMg01no063_n06.g1)
ACCAG289467AG289468
length696666
length of high quality
(start - end)
500 (65 - 564)412 (71 - 482)
definitionCHROMAT_FILE: MSMg01no063_n06.b1 PHD_FILE: MSMg01no063_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:21 2005CHROMAT_FILE: MSMg01no063_n06.g1 PHD_FILE: MSMg01no063_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCA
TGAAATTCCTGGGAAATGGATGGAACTAGAAAATATCATCCTGAGTGAGG
TAACTCAATCACAAACGAACACACATGGTATGCACTCACTGATAGGTGGA
TATTATCCCCAAAGCTCCAAATACTTTAAGATACAATTCACAGGCCAAAT
GAAGCTCAAGAAAAAGGAAGACCAAAGTATGGGTGTTCAGTCCTTAAAAG
GGGAACAAAATATTTACAGAAGCAAATATGGAGATAAAGTGTAGAGCAGA
GACTGAAGGAAAGGGCATCCACTGTCCAATCTGGGGATTCTCACATATAC
AGTTACCAAACCCATAAACTATTGTGGATGCCAAGAAGTACTTGCTGAAA
GGAGCCTGATATGGCTGTCTCTTGAGAGGCCCTACTAGAGCATTACAAAT
ACAGAGATGGATGCTCACAGACAACCACTGAACTGAACTCAGGTTCCCCA
ATAGAGGATTTATTGAAAGGACTGAAGGAGCTGAAGGAGTTTGCAACTCC
ATAGGAAGAACAACAATATCATCCAACCAGATCCTGCCAAGCTACCAGGA
ACTAAGCCATTAAACAAGTAGTACACATGGCTCCCGTTGCATATGTAATA
CAGGATGGCCTTGTCATGCATTCAAGAAAGGAGATGCCCTTAGTCC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGATATTAATAAAATATATAATCTAACAGT
TTTGCAAACCAAAAATTATGTTATGTATATCTAAGTTTTTAAAAGGTTAT
TAATTTTGCTAATATTCTTTTATGACATTAAACATTTTATAGATAGTCAA
TAATTATCATTAGAACTAATCAAAAGCTTCAATTGCTTCACATTTTTCAA
AAGAATGTGAGCTTTTTACTTTTAGTTTTATACAAGATCATATGGTAGAA
TAGATGGAAAATGCTTAGAAATAACATTCCACTGTTAAGGCATTTTCTAT
CTTTAAATAACATTAAAATCAACTGAACCACCATATCCCTTACCTGGAAA
TATCCAGACTTGATTCTATTAGATTATTTCCAAGATGAGTAATATGTAAT
ATAAAATGCAAAATATAACTGTAAAATGACTTGATGTGTAAAACTGTGAA
CCAGTTTTATCTCTTGGGAATCCATCTCAAGTAGGAAGTAGAGAGCTGAC
TTCTAACCGGTTGTGCCTCTGATCTTTACATGGCGTGGCACAGGATACCC
ATTTTACTTATAAATCCCTTGAAACTGGCCCCCCCCAAAATAAATACGGG
GGAACCGGGGATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_n06.g1 MSMg01no063_n06.g1 CHROMAT_FILE:
MSMg01no063_n06.g1 PHD_FILE: MSMg01no063_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:21 2005
         (412 letters)



>mm_chr15_49024635_49025444
          Length = 810

 Score =  739 bits (382), Expect = 0.0
 Identities = 404/412 (98%), Gaps = 2/412 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatattaataaaatatataatctaacagttttgcaaaccaaaaattatgttatgtatat 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatattaatataatatataatctaacagttttgcaaaccaaaaattatgttatgtatat 260

                                                                       
Query: 61  ctaagtttttaaaaggttattaattttgctaatattcttttatgacattaaacattttat 120
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ct--gtttttaaaaggttattaattttgctaatattcttttatgacattaaacattttat 318

                                                                       
Query: 121 agatagtcaataattatcattagaactaatcaaaagcttcaattgcttcacatttttcaa 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agacagtcaataattatcattagaactaatcaaaagcttcaattgcttcacatttttcaa 378

                                                                       
Query: 181 aagaatgtgagctttttacttttagttttatacaagatcatatggtagaatagatggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagaatgtgagctttttacttttagttttatacaagatcatatggtagaatagatggaaa 438

                                                                       
Query: 241 atgcttagaaataacattccactgttaaggcattttctatctttaaataacattaaaatc 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgcttagaaataacataccactgttaaggcattttctatctttaaataacattaaaatc 498

                                                                       
Query: 301 aactgaaccaccatatcccttacctggaaatatccagacttgattctattagattatttc 360
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 499 aactgaaccaccatttcccttacctggaaatctccagacttgattctattagattatttc 558

                                                               
Query: 361 caagatgagtaatatgtaatataaaatgcaaaatataactgtaaaatgactt 412
           |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 559 caagatgagtaatatgtaatataaaatgtaaaatataactgtaaaatgactt 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 810
Length adjustment: 9
Effective length of query: 403
Effective length of database: 801
Effective search space:   322803
Effective search space used:   322803
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)