BAC Information

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BAC

Clone NameMSMg01-064N18
Chromosome15 (Build37)
Map Location 61,417,859 - 61,418,172
singlet/doubletsinglet
Overlap genenone
Upstream geneEG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064N18.T7 (MSMg01no064_n18.b1)MSMg01-064N18.TJ (MSMg01no064_n18.g1)
ACCAG290212AG290213
length751738
length of high quality
(start - end)
318 (45 - 362)---
definitionCHROMAT_FILE: MSMg01no064_n18.b1 PHD_FILE: MSMg01no064_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:07 2005CHROMAT_FILE: MSMg01no064_n18.g1 PHD_FILE: MSMg01no064_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGATCTTTATTAGCAGTAGCAATACCTTGTAATGGCATGATAGTT
TTGAACATATGAACCTAAATGAAGCATGCTTAAACTAACTTCTCTTGAAA
ATTATGTAAACTATAGGTGAAGCTCTCCAACACATTGTAGTTAAGCTTCT
TGCACTTGTCAAATAAAATTCTATCAAATCTTCTACATAAAATATATTTC
AGTGAATTTTCCAACTATATTCTGATTAGAGTACCTGCTACCCAGAATTC
TGTTGTATTTTAGAAATCCATGCCCTGGACAGTGTCTAGGAAACCTTTTT
CCATCTATCTCTTTCTCACCCCGACCCAATCTGAGCAGCCACATCAATCA
CAGCACTTCTCTTCCCTGGCTATCTCCAAAGACTGCTTCAGGGATGTAGC
TATATTGCCTACACAATATCACAAGACTTTTTTCATAGACTTCAAAGAAA
CTTTTTCTGCTAATTTAAACCCAAGAGAATATAAATTTTGACTGCTCAGC
AAGCACCCCTCTAACACGAGGATTGCAAAATTTGTCTGAGAATGATACTA
ACTCAAAGAAAGTTAAAGAAAGAGATATTGAACCACAGAAATATTATTTG
AGTTTCTGAGTAATTCTCTACCTATAGTCAATATTAGCTTTAGCTTTATA
TATTTGTGTTTGGAATCTGCAACACATATATATATATATATATCTGCCAT
N
CTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGTCATCTCTAAGCCCAAAA
AATGGCAGGAAAGGCCCCATAAAATCCCCCTCTCCCAAAAACATTTCCCA
AAACCGCCACATCAATTTAAACCCGGCAATGGAAGGCCAATGGCGGGGCA
AAGAACCTAAACCAGGGCAAAACTGGAGGCAGTTATTTAAAGCAAACCCA
AAAAAGCAATAAACCTAGGGGGCAGGGTTTGGGGGAAGCAAAATGGATAG
GGGGAAAAGTGGGCCTAATTAAAAACTTCATCCAATTGCAACTTAACCAA
AACCCAGCCAGTTTCTCCTTGACTCCGGCTTCCCGGAGGATGGAATTTTC
CCAGCCTTCCGGTCAGGCCCAAACAAAACAAATGGAAACTCTGCAATTGA
AAACGGTTTTTAAAAAAGAAAAATCAATTAATGAATGGGAAACTCTGAGG
GGAAACCAAAAGGCAAAAGGGCAAAATTCGGAGCTTCCAAAGGTTGGGGG
CCAAACCTGGGCCTTCATAGGGGAAAGGAACGCTTTCAAAACATTGAAGT
GAGACCATATACCCCCAGAGGCTCAGGCCTGGGGTGGAACCTTTAACCAA
GAAACCCTGACTCCATATCTCCTTCCTTGGCATCACCTGGAACCTAAGGG
AAATAAACTGCCCTACGGAAAAAAACTCGATAAAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_n18.b1 MSMg01no064_n18.b1 CHROMAT_FILE:
MSMg01no064_n18.b1 PHD_FILE: MSMg01no064_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:07 2005
         (318 letters)



>mm_chr15_61417656_61418373
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgatctttattagcagtagcaataccttgtaatggcatgatagttttgaaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgatctttattagcagtagcaataccttgtaatggcatgatagttttgaaca 263

                                                                       
Query: 64  tatgaacctaaatgaagcatgcttaaactaacttctcttgaaaattatgtaaactatagg 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatgaacctaaatgatgcatgcttaaactaacttctcttgaaaattatgtaaactatagg 323

                                                                       
Query: 124 tgaagctctccaacacattgtagttaagcttcttgcacttgtcaaataaaattctatcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgaagctctccaacacattgtagttaagcttcttgcacttgtcaaataaaattctatcaa 383

                                                                       
Query: 184 atcttctacataaaatatatttcagtgaattttccaactatattctgattagagtacctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcttctacataaaatatatttcagtgaattttccaactatattctgattagagtacctg 443

                                                                       
Query: 244 ctacccagaattctgttgtattttagaaatccatgccctggacagtgtctaggaaacctt 303
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctacccataattctgttgtattttagaaatccatgccctggacagtgtctaggaaacctt 503

                         
Query: 304 tttccatctatctc 317
           ||||||||||||||
Sbjct: 504 tttccatctatctc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)