Query= MSMg01no065_d06.b1 MSMg01no065_d06.b1 CHROMAT_FILE:
MSMg01no065_d06.b1 PHD_FILE: MSMg01no065_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:38 2005
(284 letters)
>mm_chr15_64300098_64300781
Length = 684
Score = 511 bits (264), Expect = e-149
Identities = 279/284 (98%)
Strand = Plus / Minus
Query: 1 tggaaagacacattgttttcttgatattttggtaagatataaacatataaacatgtaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tggaaagacacattgttttcttgatattttggtaagatataaacatataaacatgtaaac 425
Query: 61 atgtttacatatgctcctgggtgatcatcaacagtacacggacttctgttattcatctgt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 acgtttacatatgctcctgggtgatcatcaacagtacacggacttctgttattcatctgt 365
Query: 121 caagttatggaatggagagggaagacataaagtgacatccagaaggacaggtgattccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caagttatggaatggagagggaagacataaagtgacatccagaaggacaggtgattccag 305
Query: 181 ttgcttcatttaaacttgatgactattgttccatttttactctgcattcctagttctgat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttgcttcatttaaacttgatgactattgttccatttttactctgcattcctagttctgaa 245
Query: 241 tctgtttggctgttttgagcactgagaccatgtggatgtggcta 284
|||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 244 actgtgtggctgttttgagcactgagaccttgtggatgtggcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no065_d06.g1 MSMg01no065_d06.g1 CHROMAT_FILE:
MSMg01no065_d06.g1 PHD_FILE: MSMg01no065_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:38 2005
(580 letters)
>mm_chr15_64114839_64115818
Length = 980
Score = 1031 bits (533), Expect = 0.0
Identities = 569/581 (97%), Gaps = 2/581 (0%)
Strand = Plus / Plus
Query: 1 aaagtacagcaagctggggtattcctgagagtatgaagacccacttctatttctaacctt 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 aaagtacagcaagctggggtattcctgacagtatgaagacccacttctatttctaacctt 260
Query: 61 acattttttttcttttatttttctgaaattatgtgcccagaatgggctatcacctcattt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 aca-tttttttcttttatttttctgaaattatgtgcccagaatgggctatcgcctcattt 319
Query: 121 agacctgggtttaagaccttcccgtacacataaaggtttctagtgcacaattcccctgct 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 agacctgggtttaagaccttcccgtacacataaaggtttctagtgcacagttcccctgct 379
Query: 181 gctgaacagggctagtacgtccc-tgtgcagacaggacagaacctagcaggcacacataa 239
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |
Sbjct: 380 gctgaacagggctagtacgtcccaagtgcaggcagaacagaacctagcaggcacacatga 439
Query: 240 aatggcaactagtcttacgtctcaggacttacaggaggctgcctgcagaggaagaatact 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatggcaactagtcttaagtctcaggacttacaggaggctgcctgcagaggaagaatact 499
Query: 300 accgctgcgctatcctgactcacctgtcaccttggtcagcgttgcttcctctttccttgg 359
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 accgctgcgctatcctgattcacctgtcaccttggtcagtgttgcttcctctttccttgg 559
Query: 360 cagcagctgaagaaaatgggtccagagcactaagtagtcacaaagctcgctagctcttac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagcagctgaagaaaatgggtccagagcactaagtagtcacaaagctcgctagctcttac 619
Query: 420 agccttcatttcaacggctgactcaaaatgctcaatttgccagtagattccttctgtaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agccttcatttcaacggctgactcaaaatgctcaatttgccagtagattccttctgtaag 679
Query: 480 aacatgaactcacattttagaagttaagctcagacatggaagtttaactcggcctgccaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacatgaactcacattttagaagttaagctcagacatggaagtttaactcggcctgccaa 739
Query: 540 gtctaccggacacaagatgcgaccttacttcttgccttcat 580
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtctaccggacacaagatgcgaccttacttcttgccttcat 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
