BAC Information

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BAC

Clone NameMSMg01-065H23
Chromosome15 (Build37)
Map Location 18,817,925 - 18,818,356
singlet/doubletsinglet
Overlap geneCdh10
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065H23.T7 (MSMg01no065_h23.b1)MSMg01-065H23.TJ (MSMg01no065_h23.g1)
ACCAG290694AG290695
length678679
length of high quality
(start - end)
487 (20 - 506)436 (55 - 490)
definitionCHROMAT_FILE: MSMg01no065_h23.b1 PHD_FILE: MSMg01no065_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:01 2005CHROMAT_FILE: MSMg01no065_h23.g1 PHD_FILE: MSMg01no065_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATTTTGCGAGAATCCGCGGAATTCCAGCTGTTACACAACTTCTTC
CCCGCTGGCTAACAGTCATAACGAAGGTCCTGTGCAGGCTTCTAAAGGGG
AGTAACATGAACAACTTTGCAATGCTCTAAAGCTTGTGACCAGAAATAAC
ATCCAAAGCGGCAAGATTGTGTCCATGGATGCAGCATTGGCATCAATCAT
AGGATGGTAATCAACCATTTCTGATTAAATTTAAGACCTGCTCCCCAGAA
CAAAAAAAAAAACAAAAAACACAACAAATGCCCAGGATGGCAAATCTAAC
CAAAAACCCATGGTTGAGGTGCTCATAGGCTCAGGGGTGATCCTAACACT
TAGTTTGTTAAATGAATACAGTGTCAAATTGCTCTCTAAATTCATTTGTT
TCTATGCACAGATTAGTGAAGCTCTCAGATTTCATCAGAAAAGTCTATCT
GCAGAGGATGGTGGTTAATGGAGACACACATAACTCTAAAACCTACGGAC
AATAAGTGATGGGGGAGAGCTCAGCCACAAGTGAAACATCGTACCACACC
ATCTCCTCCAAGATGAGGTGGCCTCTCATAAAAAGAGTGAGGTTTTATGC
AGACAGAGAAACCAGAGAAAAATTTTGTCTTCTGGATCTCTGCACACATG
AATGCAATGCATAAATGGATGCTATTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAAAAAAATGTGCTCCAGAAATTGATAATTATAGTCTAGGGATAAGA
GTTTGAAGTTAATGAAGGCAGAGATGAAAAAGAAAACACTGACATACACA
TACATTTACAGGAAAATTTAAAAATCTGTTCTGATTAAGTAAATTATAGT
TTTAACTCATTCAACCTTCTTTTTGCTGACAAAAATTCCTTAAAAACTAA
ACTTTAAAAATAGCAGAATCTTTATTCTAGAAAAACAAATTATTACTGAA
AAAATGTTATGCTAGTGATATTTAAGACAAAAATGGTATGTGGAATTTAT
ATACCTAAGATTGTACATTTTTCTTGTGTTGAGAGTTCATGGATCTAGAA
ACTCACTACGTAATGTGACCTGGCCTTTTGTTAAATGGCTTCCCATCAGT
ATCTCTCATTCACAAACAGTCCTTGATATTTGTGCCGAAGCTAGCGGAAT
CAAACTGGAACTTATATTGTTAGTATTATTAGTTTTAAGTTTATTTTTAG
TTCTCCTAGTTTAAAATTTTCATCCTTTTTTTTTTGAGTGTGCATTGCTC
GCATGTGTACATGTTTGCATATGCATGCATTCATGTGTATATGCTCACGT
GAAAGGCAAAAATTGATGCTAGTGTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_h23.g1 MSMg01no065_h23.g1 CHROMAT_FILE:
MSMg01no065_h23.g1 PHD_FILE: MSMg01no065_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:01 2005
         (436 letters)



>mm_chr15_18817725_18818560
          Length = 836

 Score =  820 bits (424), Expect = 0.0
 Identities = 430/432 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaaatgtgctccagaaattgataattatagtctagggataagagtttgaagttaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaatgtgctccagaaattgataattatagtctagggataagagtttgaagttaatg 260

                                                                       
Query: 61  aaggcagagatgaaaaagaaaacactgacatacacatacatttacaggaaaatttaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggcagagatgaaaaagaaaacactgacatacacatacatttacaggaaaatttaaaaa 320

                                                                       
Query: 121 tctgttctgattaagtaaattatagttttaactcattcaaccttctttttgctgacaaaa 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgttctgattaagtaaattacagttttaactcattcaaccttctttttgctgacaaaa 380

                                                                       
Query: 181 attccttaaaaactaaactttaaaaatagcagaatctttattctagaaaaacaaattatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attccttaaaaactaaactttaaaaatagcagaatctttattctagaaaaacaaattatt 440

                                                                       
Query: 241 actgaaaaaatgttatgctagtgatatttaagacaaaaatggtatgtggaatttatatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgaaaaaatgttatgctagtgatatttaagacaaaaatggtatgtggaatttatatac 500

                                                                       
Query: 301 ctaagattgtacatttttcttgtgttgagagttcatggatctagaaactcactacgtaat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ctaagattgtacatttttcttgtgttgagagttcatggatctagaaactcactatgtaat 560

                                                                       
Query: 361 gtgacctggccttttgttaaatggcttcccatcagtatctctcattcacaaacagtcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgacctggccttttgttaaatggcttcccatcagtatctctcattcacaaacagtcctt 620

                       
Query: 421 gatatttgtgcc 432
           ||||||||||||
Sbjct: 621 gatatttgtgcc 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)