Query= MSMg01no065_l10.b1 MSMg01no065_l10.b1 CHROMAT_FILE:
MSMg01no065_l10.b1 PHD_FILE: MSMg01no065_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:18 2005
(536 letters)
>mm_chr15_55937255_55938196
Length = 942
Score = 959 bits (496), Expect = 0.0
Identities = 525/538 (97%), Gaps = 6/538 (1%)
Strand = Plus / Minus
Query: 5 gaattctatgttttactaaaacttctgtttctagtaacttaccccaacaaatatgcaaat 64
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gaattctatgtgttattaaaacttctgtttctagtaacttaccccaacaaatatgcaaat 632
Query: 65 atacaaatgcaaaccacattgtaaatttcacatgcacactaaattt------cacacaca 118
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 631 atacaaatgcaaaccacattgtaaatttcacatgcacactaaattttacacacacacaca 572
Query: 119 cacacacactgtggttatgtgtgaccatagctcagagtttctttaccatccatctctctt 178
|||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 571 cacacacactgtagttatgagtgaccatagctcagagtttctttaccttccatctctctt 512
Query: 179 tctatttcatagtatcaactttaagactattttaagcaaccaatttaagagagctgaata 238
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tcgatttcatagtatcaactttaagactattttaagcaaccaatttaagagagctgaata 452
Query: 239 cactgctaacctggattcaaactggactcatttccattttctaaacaatcacatatactt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cactgctaacctggattcaaactggactcatttccattttctaaacaatcacatatactt 392
Query: 299 ggaggagtcagtaaagactaaaggtcccacctctgtgcacttcctctgtccagcactgat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggaggagtcagtaaagactaaaggtcccacctctgtgcacttcctctgtccagcactgat 332
Query: 359 tctagtcgtgtatttgttctaaatcagaagaaaggaactcaaaacactgtaacagtgtta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tctagtcgtgtatttgttctaaatcagaagaaaggaactcaaaacactgtaacagtgtta 272
Query: 419 actttacccagatcgttttagttttgctagagataggtgatattagttcacagtctcttt 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 actttacccagatagttttagttttgctagagataggtgatattagttcacagtctcttt 212
Query: 479 caaagtaatatatatatgtgtatatatgtgtatatttatatatatatatatgtgtgtg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 caaagtaatatatatatgtgtatatatgtgtatatttatatatatatatatgtgtgtg 154
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 942
Length adjustment: 10
Effective length of query: 526
Effective length of database: 932
Effective search space: 490232
Effective search space used: 490232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_l10.g1 MSMg01no065_l10.g1 CHROMAT_FILE:
MSMg01no065_l10.g1 PHD_FILE: MSMg01no065_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:18 2005
(469 letters)
>mm_chr15_55786482_55787350
Length = 869
Score = 783 bits (405), Expect = 0.0
Identities = 462/503 (91%), Gaps = 34/503 (6%)
Strand = Plus / Plus
Query: 1 gaattcacttaggcacagaaatcaggcaagacagagtggctttgaaagataatttgggtg 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcacttaggcacagaaatcatgcaagacagagtggctttgaaagataatttgggtg 260
Query: 61 gaaattgggacaggagcaataaagcatccttaggaaaataaatcgtaggcaaagcagagg 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gaaattgggacaggagcaataaagcatccttaggaaaataaatcacaggcaaagcagagg 320
Query: 121 caattagagttaaatcactggcctagaaattaagatactcagaaagaaactgaccctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattagagttaaatcactggcctagaaattaagatactcagaaagaaactgaccctgaa 380
Query: 181 caaaagatcatgtgatatttttggaagaccctctctctctctctctctctctctctctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaagatcatgtgatatttttggaagaccctctctctctctctctctctctctctctct 440
Query: 241 ctctctctctctctctcac----------------------------------ctagaaa 266
||||||||||||||| ||| |||||||
Sbjct: 441 ctctctctctctctcacacacacacacacacacacacacacacacacacacacctagaaa 500
Query: 267 ttgtaacacatttcacctccattcaagaattcaagagaatgtttcaccctgattgaaggg 326
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtaacacattttacctccattcaagaattcaagagaatgtttcaccctgattgaaggg 560
Query: 327 atcatttggaaacaggatctttggagatagatttagctaatatgggacaacatgaagaga 386
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 atcatttggaaacaggatctttggagatagatttagctaagatgggacaacatgaagaga 620
Query: 387 atgagtcccaatccaacatggtgatctactaaatatcaaaaatgtggacacatacctaac 446
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 atgagtcccaatccaacatggtgatctactaaatatcaaaaatgtgtacacatacctaac 680
Query: 447 aactggggttgtggcaccccatg 469
|||||||||||||||||||||||
Sbjct: 681 aactggggttgtggcaccccatg 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
