BAC Information

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BAC

Clone NameMSMg01-066C01
Chromosome15 (Build37)
Map Location 43,284,727 - 43,284,869
singlet/doubletsinglet
Overlap genenone
Upstream geneAngpt1, Rspo2, LOC675960, Eif3s6
Downstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066C01.T7 (MSMg01no066_c01.b1)MSMg01-066C01.TJ (MSMg01no066_c01.g1)
ACCAG291175AG291176
length740744
length of high quality
(start - end)
144 (45 - 188)---
definitionCHROMAT_FILE: MSMg01no066_c01.b1 PHD_FILE: MSMg01no066_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:49 2005CHROMAT_FILE: MSMg01no066_c01.g1 PHD_FILE: MSMg01no066_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAA
TTCCATTACAGATTTCCCATCTTTGTTTTCTTTCCACTTTATTATAATTT
GGTATTTTTCCCATTAATTTATTTGGCTTTTGGGGGGTTTTGGAGGAAAA
TGAAACAGAATTTAAACTAGAAGTTTTCTTCTCATCTCATGACTTAGTTC
AACNACACCTATTGCGCGCTTTCTAATAAAAAACACGACACGAACTGAAG
ACTCGGATCCCCATCACCCAGCCACTACATGCGCCAACATTAATCAATGA
TCACAGAACTACTTCTCCCACATTCTCTTCTTACTACCAACCACCACCCC
CAATCCGACAGACTCCATACTTTCCGCACAACCCACCCACACACATTAAC
CTCACATATACACTCCGTCCCACTGTAATCACACGACACTAAGTATAAAC
CTAAACGCTACTAATTTATTCTCCAGCTTCATCCTTAGCATAATCGATTA
ATTCCATTCTAGCACTATGAAATAAAATATACATACAAAATCAATTTATT
CTATAAGTCGTACAATTTATGTACTTTCTTCATGATATTTCCCTGACTGA
TTAGGTGTTGTTAATAATAATTACTTATAACTTCCAACTCTTTTTTCCAA
TAATTTATCACTCATTTGTCAAAAAGCTAGAACCGCCGTCCTAGAGAACA
GAAAGAAACAGATTGCACAAACCACATGCACAAACTAAGT
ATGCAGTGNGAGCCTGGCGGCGCCTGGTCTTTCAAATAAGGAGANCTATA
GAAGGATTCTCCGAATTCTCACCTGAGGATACCGAATGGCAGAGAAGCAC
CGGAAAAAATGTTCAACATCCTTATTCATCAGGGATATGCAAACCAAAGC
TACCCTGAGATTCCACCTCACACCAGTCATAATGGCTAAGATCCAATATT
CAGGTGACAGTTTGATGTTGTTGTGTATGCGCCATAATGAGGAACACTCT
TATTTTGTTGGTGGTATTGTTTATCTGTATATCCCTTATGTATATCATTC
TGTTGGTTCCTCGCAAAATTTTTTATATTAATACCGTATGTATCCTACTA
TTCTCTCCTAGTCATAAAACTAAAAAATGTCTAAACTGTTAATAAAATCT
ATAGCTCCTATATGTTCAATCATTACTTTTTTTAAAATTAAGAATTAGTT
AATAAACCACACGCCCCATACAAAATACGAATTGATATTAAAACTAGATG
TTAATTATTATTTATCGCATTTACTATCCTTATCACATAATATAATGAAT
TTTAAACACTTTCCAATTATTAACGGAAAGATCCTTTTTTACAAATTACT
CTACATACAGAAACCTATTAATTATATCATTAAAACCATACATTATCTCT
CTGGATCTTAGCCCCCCTCCCCCCTCAATCTCCAAAACCCCAATACTAAC
AGACACATCTCTGGTGAACTTAAGGGTCCCTCGCGAACAAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_c01.b1 MSMg01no066_c01.b1 CHROMAT_FILE:
MSMg01no066_c01.b1 PHD_FILE: MSMg01no066_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:49 2005
         (144 letters)



>mm_chr15_43284525_43285069
          Length = 545

 Score =  253 bits (131), Expect = 3e-72
 Identities = 140/143 (97%), Gaps = 1/143 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattccattacagatttc-ccatctttgttttctttccactttattataatttggtat 61
           |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccattacagatttcaccatcttttttttctttccactttattataatttggtat 262

                                                                       
Query: 62  ttttcccattaatttatttggcttttggggggttttggaggaaaatgaaacagaatttaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 ttttcccattaatttatttggcttttggggggttttggaggaaaatgaaacagaattaaa 322

                                  
Query: 122 actagaagttttcttctcatctc 144
           |||||||||||||||||||||||
Sbjct: 323 actagaagttttcttctcatctc 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 545
Length adjustment: 8
Effective length of query: 136
Effective length of database: 537
Effective search space:    73032
Effective search space used:    73032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)