BAC Information

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BAC

Clone NameMSMg01-066F06
Chromosome15 (Build37)
Map Location 86,922,017 - 86,922,329
singlet/doubletsinglet
Overlap genenone
Upstream geneBC021523, Cerk, LOC100042300, Tbc1d22a, LOC100042309
Downstream geneAW049604, LOC100042329, LOC100042340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066F06.T7 (MSMg01no066_f06.b1)MSMg01-066F06.TJ (MSMg01no066_f06.g1)
ACCAG291326AG291327
length770800
length of high quality
(start - end)
312 (133 - 444)---
definitionCHROMAT_FILE: MSMg01no066_f06.b1 PHD_FILE: MSMg01no066_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:05 2005CHROMAT_FILE: MSMg01no066_f06.g1 PHD_FILE: MSMg01no066_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTTTTTCCTATCTTTTCCCCTCCCTCTTTTCCTCCCCANANNANACTC
TCTTCNTTNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCCTACAAGGTACTCT
GTATCCATAGGGTACAGATGCCCCCTCTCTGCCTCAGGAGGCTAGGCTAA
TTTGTTCACCTGTGGGAAAGATCCCGCATCAATCACAGAGCAAGCCTCAC
CCTGTCTGCCTACTGGTTCCATCCCCATCACTTTCTTGCCTCCGTTTCTC
TCTCTTTTTCAGCAGGAGGGGGTACTACATACAGCTTGATCTTTGAGCAG
CTTTATAGATGCACACCTGTCTTTAAGGTATACATGTTACTAAACAAGTT
TGTTCTTCATTGGTGAATCTGCTTATATTTATGGAATTCATCCCAACAGG
ACATTGCCAATTACTGAGGGATTCATTGTCGTTCTACTTCACATGAATGT
GGAAACTCCTTATGGCTAAGATCTAGGCTCAGAGCTGTATAGAACGCCAT
GGGATGCTGTTTTTGGGTGGCGCGATGCCCTTACTGTACCCTGTTTCAGA
TTGTTCTGACTCTACTTTCCTGATGTTTTCCCTATCTGCTCTTACAGGCT
TTTGTTGCTTTTGTCATCTCTCGACCTTTTTTTCAATAGTTTTAATATCC
CCCTTTTTTGCTATTAAATGATACTTTTTATTAGCCCCTCCCGTCCTTCT
TTTTTTTCCCCTCTCCCCCC
CAAAAAAACAANCAACACAAAAAACAAAACAAAAACACCNNNNNCNCGAC
CCCCTTCTCTAAAATTGCGGCCGCCAACGACGCCGATAGTTCANGGATCG
ACGGNAANCCGNGNCTCTTTCCAAAAAAAAAAGGAGGNANGGANGAGCCC
AGGACACCCAACAAGGACCGCGAACGACCAAGAACCCCCACGCCACACCA
ACACAGCAGAGGCAGACCCACCCCGAGAGGCCAGGGGAAGGACGCAGGCG
GCCACGCCCAAACACAGTCAGTCACAGAAGCACACGGGGCACCCAGACCC
TCCAGCACACCTGCAAGGACAAGGGACCGCGACCCAAGCCCTGGCCCGCA
CCCCCGCGTTCCTGAATGTCCGACTTTTTTTTTTTTTCCCCACCACACCT
TGCATCGATGTATTTTTTATGTTCCTGCCCCCCACACGCATTTGTGTTTA
TTTTCCTATAGGCTACCTCACTTTGCTTATTTTCGCTTATCTTTGCAGTC
CTCATTTCATACTTATTCCTAACGGTTCAGAAATCTCTACCGCATGATTT
TTTCGTTTTTATTTTTCGCTGCTCGCATGCTCTCTTAGTCTGTGTTATTA
TATCTCGTTTTTTTCCCTTTTTTCTCTAGCCTCACTTTTCTTTTTATTTT
ACGCTATTTATATTCCCATTTTGAAGGTATCTACCTCAGTGGTCCTACAT
AATATCCCCGCTCCTCACATCTTCTGCCTTATTCCCACGAGTCCCTTTAT
TTTTTTTAATCTGATTCACTATACACCGCACTGTCTCAATTTTCTTATTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_f06.b1 MSMg01no066_f06.b1 CHROMAT_FILE:
MSMg01no066_f06.b1 PHD_FILE: MSMg01no066_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:05 2005
         (312 letters)



>mm_chr15_86921817_86922529
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%), Gaps = 1/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcctacaa-ggtactctgtatccatagggtacagatgccccctctctgcctcaggagg 59
           |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctgcctacaaaggtactctgtatccatagggtacagatgccccctctctgccccaggagg 260

                                                                       
Query: 60  ctaggctaatttgttcacctgtgggaaagatcccgcatcaatcacagagcaagcctcacc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaggctaatttgttcacctgtgggaaagatcccgcatcaatcacagagcaagcctcacc 320

                                                                       
Query: 120 ctgtctgcctactggttccatccccatcactttcttgcctccgtttctctctctttttca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtctgcctactggttccatccccatcactttcttgcctccgtttctctctctttttca 380

                                                                       
Query: 180 gcaggagggggtactacatacagcttgatctttgagcagctttatagatgcacacctgtc 239
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggagggggtacggcatacagcttgatctttgagcagctttatagatgcacacctgtc 440

                                                                       
Query: 240 tttaaggtatacatgttactaaacaagtttgttcttcattggtgaatctgcttatattta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaggtatacatgttactaaacaagtttgttcttcattggtgaatctgcttatattta 500

                        
Query: 300 tggaattcatccc 312
           |||||||||||||
Sbjct: 501 tggaattcatccc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space:   213312
Effective search space used:   213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)