BAC Information

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BAC

Clone NameMSMg01-066L13
Chromosome15 (Build37)
Map Location 66,126,958 - 66,127,426
singlet/doubletsinglet
Overlap genenone
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3
Downstream geneLrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066L13.T7 (MSMg01no066_l13.b1)MSMg01-066L13.TJ (MSMg01no066_l13.g1)
ACCAG291627AG291628
length710709
length of high quality
(start - end)
492 (40 - 531)469 (70 - 538)
definitionCHROMAT_FILE: MSMg01no066_l13.b1 PHD_FILE: MSMg01no066_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:36 2005CHROMAT_FILE: MSMg01no066_l13.g1 PHD_FILE: MSMg01no066_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTATACGACTCATATATTCAGAGATCCGCGGATTCT
TTGTTTATCTCTGAGCCCCATTTTTAGTGGGTTATATGATTTTCTGAAGC
CACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATT
TAGAATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTGTTGTCTTA
TTGATGGTGTCTTTCGCCTTATAGAAGCTTCGAAATTTTATGAGGTCCCA
TTTGTTGATTCTCGATCTTACAGCACAAGCCATTGTTGTTCTATTCAGGA
ATTTTCCCCCTGTGTCCATATCTTCGAGGCTTTTCCCCACTTTCTTCTCA
ATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGA
CTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTCTTCTAT
GGTAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTT
CCACTGGATGGTTTTAGTTCTCTTGTCAAAGATCAAGTGACCGTAGGTGT
GTGGGTTCTTTTCTGGGTCTTCAGCTCTATTCCATTGGTCTACCTATATG
TCGCTGTACTACTACTATGCAGCTTTTATCACATTTGCTCTGTAGTACTG
TTTTATGTTCAGGCATGGTGATTCCTCCTGCAGTTCCTTTTTACACTGAG
AAGGGCTTTC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTCCAGAGAAGAAGCTAAGAGTGGGTGTTA
AGAGTGGGACAGGAGGTTGTGGGTACCTACACAATGATGGACAGAAGTCA
AGCTATTGAAACAACCTGTTCCAAGAAGGAATTCTGCACACCCCTAATGC
CAAATGTTTGACCATGGGCAGGTTCAATGATTGGTCCTCAGCTCCCCTGT
AACGTAGGAATACTATTAATTACTTTGAAAGGATATGTCAGTATTAAGAG
AGTTAACACCTGTCAAACTTGCCACATGGACTTAATACCTGCTTACTGAC
AAAACTATGAATATTATTGCATTCAGAGTTTTTAATACTACACATAGTTA
TTAATACTACATCCAATTTAGAAGAGAACTTTTGGGTGCCAAGTCCAATA
TTGATTCAACACTGACCCACATTTTATAGAACAGCTCAGCTGTATATTAT
GATACACACGTAATGAACTGAAGTGCTTTCTGTTTGTATTTATAGAAACC
TGAGTGTAGACATTAGTTTGCTAAGATTGCTGTGACAAAACCACCCTGGC
TGATGTATGCCACCAAAAGGGCTTTCTCACAACCTGTAAGCTGTAGAATG
ACAGCCACATGCAATGCTACTGTTACCTGCAGAGGATGTTCTCTATGGCT
TTCAGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_l13.g1 MSMg01no066_l13.g1 CHROMAT_FILE:
MSMg01no066_l13.g1 PHD_FILE: MSMg01no066_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:37 2005
         (469 letters)



>mm_chr15_66126758_66127626
          Length = 869

 Score =  868 bits (449), Expect = 0.0
 Identities = 464/469 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccagagaagaagctaagagtgggtgttaagagtgggacaggaggttgtgggtaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 attccagagaagaagctaagagtgggtgttaagagtgggacaggaggttgtgggtacgta 260

                                                                       
Query: 61  cacaatgatggacagaagtcaagctattgaaacaacctgttccaagaaggaattctgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaatgatggacagaagtcaagctattgaaacaacctgttccaagaaggaattctgcac 320

                                                                       
Query: 121 acccctaatgccaaatgtttgaccatgggcaggttcaatgattggtcctcagctcccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccctaatgccaaatgtttgaccatgggcaggttcaatgattggtcctcagctcccctg 380

                                                                       
Query: 181 taacgtaggaatactattaattactttgaaaggatatgtcagtattaagagagttaacac 240
           ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 381 taacgtaggaatactattaattactttgaaaggctatttcagtattaagagagttaacac 440

                                                                       
Query: 241 ctgtcaaacttgccacatggacttaatacctgcttactgacaaaactatgaatattattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtcaaacttgccacatggacttaatacctgcttactgacaaaactatgaatattattg 500

                                                                       
Query: 301 cattcagagtttttaatactacacatagttattaatactacatccaatttagaagagaac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 cattcagagtttttaatactacacatagttattaatactacatccaatttagaagaaaac 560

                                                                       
Query: 361 ttttgggtgccaagtccaatattgattcaacactgacccacattttatagaacagctcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgggtgccaagtccaatattgattcaacactgacccacattttatagaacagctcag 620

                                                            
Query: 421 ctgtatattatgatacacacgtaatgaactgaagtgctttctgtttgta 469
           ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 ctgtatattatgatacacaggtaatgaactgaagtgctttctgtttgta 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)