Query= MSMg01no068_f23.b1 MSMg01no068_f23.b1 CHROMAT_FILE:
MSMg01no068_f23.b1 PHD_FILE: MSMg01no068_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:47 2005
(574 letters)
>mm_chr15_28478339_28479311
Length = 973
Score = 977 bits (505), Expect = 0.0
Identities = 558/579 (96%), Gaps = 13/579 (2%)
Strand = Plus / Plus
Query: 2 gaattc-acagactggaat---tgcgtaaaaattcatgggttcatagtcacaaatagata 57
|||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcaacagactggaataagt--gtaaaaattcatgggttcatagtcacaaatagata 259
Query: 58 ttaaaattcacagcattgtagtgatagaccccttctcctctgaaaatctctcatttgtca 117
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 260 ttaaaattcacagcattgtagtgatagacccctt---ctctgaaaatctctcatttgtca 316
Query: 118 caagttgaagttgttaaggcactattgtcccaagagctggtaaataagagaaaaaggaag 177
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 317 caagttgaagttgttaaggcactattgccccaagagctggtaaataagagaaaaaggaag 376
Query: 178 catttcacagcttccccttcaaggcaagcatttgatggctaccaactggttgatgaaaga 237
|||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 377 cattccacagcttccccttcaaggaaaacatttgatggctaccaactggttgatgaaaga 436
Query: 238 aagagctttagttggcatgtgaaaagaaaataattctattcaaatatctttgttggagtg 297
|||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 437 aagagcttgggttggcatgtgaaaag-aaataattctactcaaatatctttgttggagtg 495
Query: 298 atgcattaaaaaatacagaagtacgaa-aaaggttaattcagagaagagaaaacagccag 356
||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct: 496 atgcattaaaaaatacagaagtacgaagaaag-ttaattcagagaagagaaaaccgccag 554
Query: 357 aagggaaccagttaagagcccaatcctgttgttctgtcgaaaagaatatatgacagatgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagggaaccagttaagagcccaatcctgttgttctgtcgaaaagaatatatgacagatgt 614
Query: 417 tttagatgtccttttcttctatggtatcttttactcctgcagcagttgctgatcagcaca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tttagatgtccttttcttctatggtatcttttactcctgcagcagttgctgatcagcaca 674
Query: 477 ccatgccccatcccatagctgtgc-tgccttccaggagacctgctcaaacctgaggcaca 535
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 675 ccatgccccatcccatagctgtgcctgccttccaggagacctgctcaaacctgaggcaca 734
Query: 536 caattccatcttcctcctgggaggcctgctcaaacccag 574
|||||||||||||||||||||||||||||||||||||||
Sbjct: 735 caattccatcttcctcctgggaggcctgctcaaacccag 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 973
Length adjustment: 10
Effective length of query: 564
Effective length of database: 963
Effective search space: 543132
Effective search space used: 543132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_f23.g1 MSMg01no068_f23.g1 CHROMAT_FILE:
MSMg01no068_f23.g1 PHD_FILE: MSMg01no068_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:47 2005
(354 letters)
>mm_chr15_28599979_28600732
Length = 754
Score = 677 bits (350), Expect = 0.0
Identities = 353/354 (99%)
Strand = Plus / Minus
Query: 1 caaaacacctagatatcaaaaataaactaattaaaattatgtctaagagaattcacaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 caaaacacctagatatcaaaaataaactaattaaaattatgtctaagagaattcacaaaa 631
Query: 61 taggaaactcaaatggctgtgaaaaaacaaacaaacaaaaacaaacagaaaagttcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 taggaaactcaaatggctgtgaaaaaacaaacaaacaaaaacaaacagaaaagttcagca 571
Query: 121 tcaccaaggaaatgcattctgacacacagcaaaatgatcaaggtctagtagtcatctcct 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 570 tcaccaaggaaatgcattctgacacacagcaaaatgaccaaggtctagtagtcatctcct 511
Query: 181 taccctcataagaagaaatcagagctaacattatgcttctcaggagaagataaccaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 taccctcataagaagaaatcagagctaacattatgcttctcaggagaagataaccaaata 451
Query: 241 actgctgtggttccctccatattgagacacaataactcagcaaataataatcggatcccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 actgctgtggttccctccatattgagacacaataactcagcaaataataatcggatcccg 391
Query: 301 actctgtttcccagcagtaagtgtcagtgaggaatattccatattttatgtgtg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 actctgtttcccagcagtaagtgtcagtgaggaatattccatattttatgtgtg 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space: 257025
Effective search space used: 257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
