Query= MSMg01no068_o10.b1 MSMg01no068_o10.b1 CHROMAT_FILE:
MSMg01no068_o10.b1 PHD_FILE: MSMg01no068_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:29 2005
(466 letters)
>mm_chr15_55755641_55756508
Length = 868
Score = 837 bits (433), Expect = 0.0
Identities = 456/465 (98%), Gaps = 4/465 (0%)
Strand = Plus / Plus
Query: 5 gaattcatcacaatattctcctactatgcttgataacctcttattcctaattagccctcc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcacaatattttcctactatgcttgataacctcttattcctaattagccctcc 264
Query: 65 ttcaacttttatgtctcgcccccccc---aacctccactgtgtgtgtatgtgactcacac 121
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 ttcaacttttatgtctcgcccccccccccaacctccactgtgtgtgtatgtgactcacac 324
Query: 122 acaatgggcttcattagggttgtttacgggaatgtgggtgggagtttgtttacaagagtg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaatgggcttcattagggttgtttacgggaatgtgggtgggagtttgtttacaagagtg 384
Query: 182 tgtacactttgctggttgctacaccactgggggaaaaatatctctacttttcctatcaac 241
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 tgtacactttgctggttgctacaccactgggg-aaaaatatctctacttttcctatcaac 443
Query: 242 ttttaatctgctgtaggtgtagagacctatatgctcctcctgcttccatggcagggtgtt 301
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 ttttaatctgctataggtgtagagacctgtatgctcctcctgcttccatggcagggtgtt 503
Query: 302 gatagacctgatctcgtgcagttcttatagctgctgcaagttcaagtgtgctacagccat 361
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gatagacctgatcttgtgcagttcttatagctgctgcaagttcaagtgtgctacagccat 563
Query: 362 ggctgtgcctggaagctagcattgcaggtcccccctcccccaacacatacacttctaata 421
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggctgtgcctggaagttagcattgcaggtcccccctcccccaacacatacacttctaata 623
Query: 422 gctcttatgtgctttccacctggggaatgctcgctgagcctagaa 466
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctcttatgtgctttccacctggggaatgctcgctgagcctagaa 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 868
Length adjustment: 10
Effective length of query: 456
Effective length of database: 858
Effective search space: 391248
Effective search space used: 391248
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_o10.g1 MSMg01no068_o10.g1 CHROMAT_FILE:
MSMg01no068_o10.g1 PHD_FILE: MSMg01no068_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:29 2005
(526 letters)
>mm_chr15_55895914_55896837
Length = 924
Score = 853 bits (441), Expect = 0.0
Identities = 505/531 (95%), Gaps = 11/531 (2%)
Strand = Plus / Minus
Query: 1 tctggtgggagattgattgtatagaatgtggggtccagggtcaggcacaggctaagcagc 60
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 704 tctggtgggagatcgattgtatagaatgtggggtccagggtcaggcacagaataagcagc 645
Query: 61 acacatgctcccccaccccacccccattggtgatgagagtagttaaaagtctttttatta 120
| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 644 atacatgctcccccaccccactcccattggtgatgagagtagtt--aagtctttttatta 587
Query: 121 taaatttcaagatctaatattacgtgactaagataaatctgagatgacttcttatcaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 taaatttcaagatctaatattacgtgactaagataaatctgagatgacttcttatcaagc 527
Query: 181 acgagtgctttgcagggtggcactgtgccttcaggcatcagagagacaggtcccacccca 240
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aggagtactttgcagggtggcactgtgccttcaggcatcagagagacaggtcccacccca 467
Query: 241 tccttgaggtatggggtcagtcaggtgataagaaattctgctgagtcccactagctaccg 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tccttgagggatggggtcagtcaggtgataagaaattctgctgagtcccactagctaccg 407
Query: 301 agagtgcataggttcctctgggtctgttgccctggtgctgggctgagttcaggtcaagaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 406 agagtgcataggttcctctgggtctgttgccctggtgctgggctgagttcaggtcacgaa 347
Query: 361 gtctcttgaatgctgaagaccaagccagaacctcagcagcag-agttggacttatattca 419
|||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 346 gtctcttgaatgctgaagaccaagccagaacctcagcagcagta-ttggacttaaattca 288
Query: 420 agtttctgtcccacttttcatttaagggatacctaataataaatgataaactcttataat 479
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 287 agtttctgtcccacttttcatctaagggatacctaataataaatgataaactcttacaat 228
Query: 480 gtatttcaacgatttacatttaataag-------actcaactgattctgta 523
|||| |||| | ||||||||||||||| |||||||||||||||||
Sbjct: 227 gtatatcaatggtttacatttaataaggcgtatgactcaactgattctgta 177
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 924
Length adjustment: 10
Effective length of query: 516
Effective length of database: 914
Effective search space: 471624
Effective search space used: 471624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
