This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-068P20
Chromosome
15 (Build37)
Map Location
40,710,679 - 40,873,696
singlet/doublet
doublet
Overlap gene
Zfpm2
Upstream gene
Lrp12
,
LOC100039130
,
LOC670013
,
LOC664872
,
Ppia-ps25
Downstream gene
Oxr1
,
Abra
,
EG432946
,
LOC432947
Link
Open Mouse BAC browser
Click to get alignment info.
name
Lrp12
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:239393
MGI:2443132
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100039130
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039130
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs
name
LOC670013
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:670013
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
LOC664872
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:664872
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins
pseudo
: _no_value
name
Zfpm2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:22762
MGI:1334444
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ppia-ps25
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:595141
definition
note
: peptidylprolyl isomerase A pseudogene 25
pseudo
: _no_value
name
Oxr1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:170719
MGI:2179326
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Abra
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:223513
MGI:2444891
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG432946
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:432946
MGI:3645122
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 143 ESTs, 56 Proteins
name
LOC432947
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:432947
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 33 ESTs, 5 Proteins
pseudo
: _no_value
name
Lrp12
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142353868
GeneID:239393
MGI:2443132
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: low density lipoprotein-related protein 12
transcript_id
: NM_172814.2
name
LOC100039130
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149266565
GeneID:100039130
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs
product
: hypothetical protein LOC100039130
transcript_id
: XM_001472512.1
name
Zfpm2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803494
GeneID:22762
MGI:1334444
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: zinc finger protein, multitype 2
transcript_id
: NM_011766.3
name
Oxr1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118131049
GeneID:170719
MGI:2179326
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: oxidation resistance 1
transcript_id
: NM_130885.2
name
Abra
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142352903
GeneID:223513
MGI:2444891
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: actin-binding Rho activating protein
transcript_id
: NM_175456.3
name
EG432946
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149266567
GeneID:432946
MGI:3645122
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 143 ESTs, 46 Proteins
product
: predicted gene, EG432946, transcript variant 1
transcript_id
: XM_484460.5
name
EG432946
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149266570
GeneID:432946
MGI:3645122
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 100 ESTs, 35 Proteins
product
: predicted gene, EG432946, transcript variant 7
transcript_id
: XM_895768.3
name
EG432946
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149266568
GeneID:432946
MGI:3645122
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 89 ESTs, 41 Proteins
product
: predicted gene, EG432946
transcript_id
: XM_001472721.1
name
Lrp12
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27370214
CCDS:CCDS27446.1
GeneID:239393
MGI:2443132
definition
GO_component
: GO:0005905 - coated pit [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006897 - endocytosis [Evidence IEA]
codon_start
: 1
product
: low density lipoprotein-related protein 12
protein_id
: NP_766402.1
name
LOC100039130
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149266566
GeneID:100039130
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001472562.1
name
Zfpm2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6756071
CCDS:CCDS27447.1
GeneID:22762
MGI:1334444
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003714 - transcription corepressor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
function
: cofactor for GATA transcription factors
product
: zinc finger protein, multitype 2
protein_id
: NP_035896.1
name
Oxr1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:18700026
CCDS:CCDS27448.1
GeneID:170719
MGI:2179326
definition
GO_component
: GO:0005739 - mitochondrion [Evidence IEA]; GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
codon_start
: 1
note
: nucleolar protein C7
product
: oxidation resistance 1
protein_id
: NP_570955.1
name
Abra
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:30425194
CCDS:CCDS27449.1
GeneID:223513
MGI:2444891
definition
GO_component
: GO:0005856 - cytoskeleton [Evidence IEA]
GO_function
: GO:0003779 - actin binding [Evidence IDA]; GO:0003713 - transcription coactivator activity [Evidence IDA]
GO_process
: GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0000060 - protein import into nucleus, translocation [Evidence IDA]; GO:0006605 - protein targeting [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: striated muscle activator of Rho-dependent signaling
protein_id
: NP_780665.1
name
EG432946
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51769129
GeneID:432946
MGI:3645122
definition
codon_start
: 1
product
: similar to heterogeneous nuclear ribonucleoprotein A3, isoform 1
protein_id
: XP_484460.1
name
EG432946
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:82957137
GeneID:432946
MGI:3645122
definition
codon_start
: 1
product
: similar to heterogeneous nuclear ribonucleoprotein A3, isoform 7
protein_id
: XP_900861.1
name
EG432946
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149266569
GeneID:432946
MGI:3645122
definition
codon_start
: 1
product
: similar to heterogeneous nuclear ribonucleoprotein A3
protein_id
: XP_001472771.1
name
LOC670013
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:670013
definition
number
: 3
pseudo
: _no_value
name
LOC670013
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:670013
definition
number
: 2
pseudo
: _no_value
name
LOC670013
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:670013
definition
number
: 1
pseudo
: _no_value
name
LOC664872
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:664872
definition
number
: 1
pseudo
: _no_value
name
LOC432947
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149266571
GeneID:432947
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 33 ESTs, 5 Proteins
product
: similar to GC-rich promoter binding protein 1-like 1
pseudo
: _no_value
transcript_id
: XR_030860.1
clone name
MSMg01-528G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-233B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-106P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-146P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-275N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146O14
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-351O17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-520M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-298I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-276O15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-543L11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-409I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-198H05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-097M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-432C14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-177K23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-110I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-268L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544P05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-213G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154L11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-154L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-355D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173P11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548C07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507F08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-390M07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-485B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-383H14
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-418K02
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-526K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-205E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-263H02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484M17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-212H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429N05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-523D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-149F23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397H22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322N06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-491A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-536P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-319H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-104H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-426E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-167A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-326L06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056A06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-071P09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-074G12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-072P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-515D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-315I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-111P07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-303K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354H04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-483C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-178O22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327H14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103G11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-176B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-412J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-179I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-298H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-306A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-512A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-081P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-217F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-361H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-451M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261F10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-451J06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066J13
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-384M08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-305B02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369K18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-075N07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132N13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-135B16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327C18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-547F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350N11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-355L19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-428E01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-075C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-070K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-293H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477N12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-072H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546A07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-469M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-265K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181P22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-366H15
singlet/doublet
doublet
plural/unique
unique
clone name
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