BAC Information

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BAC

Clone NameMSMg01-069A21
Chromosome15 (Build37)
Map Location 13,052,285 - 13,052,506
singlet/doubletsinglet
Overlap geneCdh6
Upstream geneZfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen
Downstream geneLOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069A21.T7 (MSMg01no069_a21.b1)MSMg01-069A21.TJ (MSMg01no069_a21.g1)
ACCAG293404AG293405
length689716
length of high quality
(start - end)
240 (108 - 347)58 (258 - 315)
definitionCHROMAT_FILE: MSMg01no069_a21.b1 PHD_FILE: MSMg01no069_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:41 2005CHROMAT_FILE: MSMg01no069_a21.g1 PHD_FILE: MSMg01no069_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACGACTCCTATAGTTTCAGATCCGCGGAATTCATTCACTCTTTTTCACC
AAGACTGTGGCTTGGGTTCTTGTTATGATGCCATTGGCTTGAGGTCACTT
GTACCTTGCCTTTGCCACCCTGTTGCATGCAGCCTCTAAGGCAACTAAGA
AGCTCATGTTAGTAGCATGGTTTCCATATCCATCATCGGCCTTCCCAGAA
CAAACCTTTAGCACTTTTCAAGGGTGCCGGTATGAGATAGAGATACAGAT
ATAGATATAAATATATTCCCTAGGGCATCTAGCAGATGTTAAAAAAAGAC
TAATGAAGGTAAGTGAATAGTAAAAAAAAAAAAAAAAGGAAGTGCTTTTT
ATTTTTCTATACAGCAAAGTCTTTGGATTCCTTCTACTGGGAATATTTAG
ACCCCCAATTCACTGTGAACCACTGCTATGGATACTTTTCAATCAACCAA
GCCAAAGAAGTTAAGGTTCGGTGGGAAGTACCCATGTGCTCCATCTAAAC
TTTTCTTCCCCTCTGCCTGGCATAAGTCTTTGAATCCTTTGCTATGCATT
CCTCAAGCTTGCAATTCTTTTGTGTAGGAGGATTATGCTCCTAGGCCTGA
ATATGCTCATCTCCTTTGGCCAAAGGTGATCCGCCCCTATATACAGAACC
CAGTGGCCATGATAACCCGTTTACCGGTGCGAAATAATT
ATGTGGGTAGGCCGGAGGCAGCTGNCCGTTCCTTTACCGCCAGACNANAG
AAGGANCTGCCANNCACCCGGGCGAGAACCANGGCACNAAGGAGAAAAGC
NNNAGACAGGAGTTTACACCCCNGNNANNAANNANAANAGGNNNNNGNCN
GCANCNGAGGCACNCAANNCCNGGAGCAAAANANANGAANNGGGANAAGG
AGAACGAGNACAAACGANNAANAAACAACAACCGCGAAGCACACAGACAT
TTTTTGCACATAGATGTAATGCGAGGGATGATGATGGGGTTTAGTTTTTC
CTTAGCAACAGCCAATCTTTTTTTTCTCCCAGAGACANCNNGAAACCAAA
AGGAACATTTTTTTTTTTTCCCCCCCCCCCCCGCCTTTATGGGACTTGCA
TCTGTACATGATGGTCCTTTGCTAAACACAAAAAAAAAATGCACCGGCAC
GCTAGGCTGAACCCTCATAGAAGACATTTTCCTCTTTCCTTTGCTTTTGC
CATGTACAGAGAATTCTACTCACTACTCCCTATCACTATCCGGAATCCCG
TTCCCACGATCCCTTTTTACCTCATCCTCATCTTCTTTCATCGTTCTTCA
ACTATTGCGAATATTCGTCCTGACGCCTACTCTCTTATGCTCGCCCGAAG
GCCCAGCTCCTTTCTTCTTTTTTTTCTTTACAAACATCTGCCACTTTCCC
TCCTATCCCGCCCGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_a21.b1 MSMg01no069_a21.b1 CHROMAT_FILE:
MSMg01no069_a21.b1 PHD_FILE: MSMg01no069_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:41 2005
         (240 letters)



>mm_chr15_13052077_13052716
          Length = 640

 Score =  414 bits (214), Expect = e-120
 Identities = 220/222 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   caccctgttgcatgcagcctctaaggcaactaagaagctcatgttagtagcatggtttcc 68
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 430 caccctgttgcatgcagcctataaggcaactaagaagctcatgttagtagcatgggttcc 371

                                                                       
Query: 69  atatccatcatcggccttcccagaacaaacctttagcacttttcaagggtgccggtatga 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atatccatcatcggccttcccagaacaaacctttagcacttttcaagggtgccggtatga 311

                                                                       
Query: 129 gatagagatacagatatagatataaatatattccctagggcatctagcagatgttaaaaa 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gatagagatacagatatagatataaatatattccctagggcatctagcagatgttaaaaa 251

                                                     
Query: 189 aagactaatgaaggtaagtgaatagtaaaaaaaaaaaaaaaa 230
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aagactaatgaaggtaagtgaatagtaaaaaaaaaaaaaaaa 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)