BAC Information

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BAC

Clone NameMSMg01-069P21
Chromosome15 (Build37)
Map Location 71,408,763 - 71,408,886
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik
Downstream geneLOC100040847, Col22a1, Kcnk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069P21.T7 (MSMg01no069_p21.b1)MSMg01-069P21.TJ (MSMg01no069_p21.g1)
ACCAG294119AG294120
length720710
length of high quality
(start - end)
77 (41 - 117)124 (242 - 365)
definitionCHROMAT_FILE: MSMg01no069_p21.b1 PHD_FILE: MSMg01no069_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:54 2005CHROMAT_FILE: MSMg01no069_p21.g1 PHD_FILE: MSMg01no069_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTTTGTATACCCCGCTGGCCTTGAACTCAGAAATCTGCCTGCTTCTGCC
TCCCAAGTGCTGGGATTACACCGCGTGTGCCACCACCGCCCAACTGCTGT
TTGCTTTCTTGATTGCTTGGGATTTTTTTTTTTTTTTTTTTTTTTTTTTT
TGACCAATGAGGAATCCTCAGGAGCTCTGGAGTAACCAATTATCCCATTG
TCACTATGGGGGAGGTGCCAGGTTGCCACCTCTCGGGGACTTCTATAAAC
ATGGGGGAAACAGCCATTGTCCTGTTCTGGGCCAAATTCCACTAGGTTCC
TAGGATCCTTTTTTTTTGTGCCCCCCCCCCTCCCATTAGACGTAATTGTA
GCGTTACTTTTCTCCACCCAATCACAATATGATGGACAGGCCCTGGCGGC
ATATCCGGTCTGTTCTCATCTAGTGGAAACTCTGACTCATAGCTCTAAAA
TCTCTTCACCCATTTCATAAAGCTCCTATGTGAGGTTTATTATCACAGCT
GTCCCACCCTTCAAATTCTCATAGCCCTTTGGGTTATAATTTTTTGAAAC
CCCACATTTTGCCCTCGCACCTTCTCCCCCTGTAATCCAGCCGCAACCCC
CGTGTACCTTAAACACCACTCAAAATTGGCTCATTTTCTTCCGGTCATTT
CTTTTCCGGTTCCATTATTT
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCCCGAAAAACAATTTATTTTCATTAGAAAAGGATGTAGTGGTAGGC
CTGATGGTGGAGGCCAAGGAGTATTGTGCAGATAAATGTTCAAAAGCTGT
CAAGACATATAGTGTGTCCGTTTCCATGCTGGGGACCCTCCTCTTAACAC
AGTCAGTTTCAACATATCAACTTGAAGTCAAAGAGCGTGAAGTTGTGCAC
AATCAATACACTATTGCCTGGTGAGGGGAAAGCCACTTAAAAATGCAATA
ACTGTGCTAATGATCTTCTAGAGACATCCAATTAAAAAAAACTGAATTGA
ACAAATGTTTATTTACTGCCCACCACTCAGATCTTCCATTAACAGCTGCA
AACTTACATTATCTGGCTATATTATTTCTTCCATTTTTTTTTTTTTGGTG
TGTGATTGGAAATTATGGTTTTCTGGTGCATGCATGGCGTGTGTTATATG
TATCTGCGTGTACACTCTTGTCACTATTTATGTACATGTCAGAGGAGATT
AATTAGCACCCTGTTCTCTCTATCTCTGCCCCACTCCCTTAAACCTGATT
CTTACACCCTGCGATTTTGTTCGGATGCAAACTTGCCCTCCGTTATTCTG
TTCCTTTCCCCTTCAACTATTTATCTCTAAGTCCCTGCGTAATACCTTAA
CTACTGCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_p21.g1 MSMg01no069_p21.g1 CHROMAT_FILE:
MSMg01no069_p21.g1 PHD_FILE: MSMg01no069_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:54 2005
         (124 letters)



>mm_chr15_71408563_71409086
          Length = 524

 Score =  217 bits (112), Expect = 2e-61
 Identities = 121/124 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttgtgcacaatcaatacactattgcctggtgaggggaaagccacttaaaaatgcaataa 60
           ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 gttgtacacaatcaatacactattgcctggtgaggagaaagccacttaaaaatgcaataa 265

                                                                       
Query: 61  ctgtgctaatgatcttctagagacatccaattaaaaaaaactgaattgaacaaatgttta 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgtgctaatgagcttctagagacatccaattaaaaaaaactgaattgaacaaatgttta 205

               
Query: 121 ttta 124
           ||||
Sbjct: 204 ttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)