BAC Information

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BAC

Clone NameMSMg01-071B11
Chromosome15 (Build37)
Map Location 25,438,898 - 25,590,972
singlet/doubletdoublet
Overlap geneMyo10
Upstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583
Downstream geneLOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044, Fbxl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071B11.T7 (MSMg01no071_b11.b1)MSMg01-071B11.TJ (MSMg01no071_b11.g1)
ACCAG294958AG294959
length691691
length of high quality
(start - end)
356 (47 - 402)321 (77 - 397)
definitionCHROMAT_FILE: MSMg01no071_b11.b1 PHD_FILE: MSMg01no071_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:23 2005CHROMAT_FILE: MSMg01no071_b11.g1 PHD_FILE: MSMg01no071_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,590,621 - 25,590,972)(25,438,898 - 25,439,218)
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCATTTAGTCCCCAGGGGAACCTAGGAGACCACTGCAGGCATCGTC
AAACCCAAAGGCCCACCTAAGGGTGAGTAGATATAAGTACTACTTATATC
TTGAACTACTGACCAAAGGATCTTAACACTAGCCCACCACCTCGGGGATG
GCAGTTATACCTCCCCAGGTATGTCAGGACCTAGCTGGCCACCCTCCTTC
ATTCTCCATTATCTAAGGCTCCTTCCACCTTTGGAGCAAGATGAATATTA
CAGGTCTTGACATAGGGAAAGTGTGGTCCGCTGACCCCACACAACCATCA
AGACTTCAACCTATTGCTGCCCTTTCTTCCCAGAAAGGAATAAGTTCTAA
TCATACACCTTTTTACCCCAGGGCACGTACCCCATCTGAGGGCGCTGTCC
CTGTACCTGCTCACCGGGTCTACGTAACGCACCTCACATGAGGATTCTCT
AGCAACTTCCTAGACACAACTGCAACTGGTTTCTGATATGTGGTGTGCTG
CTGCCCATTTTTTGCTTGTTGCTTGCTTGTCTTCACACACCCCAACAGTG
TTGATGATGTATCTCAGTTTGATTAGAGCGCTCGCCTACTGCCCCCAATA
TTTGTGTACTCATCATCTTGTATTACTGGCTTGTTGTTTCC
TTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAATAAGCTCAGATGCATTCC
CAGCAATAAATCCCACAGACGCACTGGGGAGCAGCTTTGGTGTGCAGCTG
TTTAGGAAGCTGGGCTCGGAATGCAGGGAGAGTCGTGGTGGGTGAGAGAT
ATATCTGCCATGAACGTTCTTCCTGACTCCCCATGCAACTTGGTGACCAG
GTTATTGAGACAGGAACACAAATGTGTTTCAAGTAGCTTTTCTTCAACCT
GGAGAGTAAGCAGCAGGCACCATCACAAGTATGGAGAGAGTAAAATTCCT
TGCTCAGTGATGCATACTGCCTTGACCGATTGGGGCCTTTGAACCAGACT
GCCAAGGTCATAGCCACCATGCATGGGCAGTTCTGTAAAGTGAAGGCTGT
CTAAGGCAAACGGAACTAGAAGGTGAGCTCTTCAGCCACTGTCGAAGCGC
TGGGGAGACAGAGGGAGGAATGCACAAGTGCACACACACAATATTACTAC
TGTTTTAGAAAGAGTTACCTTTTTTATAAGGCCTGGGCTGGAGCGATGAC
TCCGCGCATATTGGCTCAGATTGCTCTTGCAGAAGCCTATGTTCATTTGA
CAGCTCCCACTACGGCTGCTTACAAGGTTCTGTAACTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_b11.b1 MSMg01no071_b11.b1 CHROMAT_FILE:
MSMg01no071_b11.b1 PHD_FILE: MSMg01no071_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:23 2005
         (356 letters)



>mm_chr15_25590417_25591172
          Length = 756

 Score =  665 bits (344), Expect = 0.0
 Identities = 350/352 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttagtccccaggggaacctaggagaccactgcaggcatcgtcaaacccaaag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gaattcatttagtccctaggggaacctaggagaccactgcaggcatcgtcaaacccaaag 497

                                                                       
Query: 65  gcccacctaagggtgagtagatataagtactacttatatcttgaactactgaccaaagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcccacctaagggtgagtagatataagtactacttatatcttgaactactgaccaaagga 437

                                                                       
Query: 125 tcttaacactagcccaccacctcggggatggcagttatacctccccaggtatgtcaggac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tcttaacactagcccaccacctcggggatggcagttatacctccccaggtatgtcaggac 377

                                                                       
Query: 185 ctagctggccaccctccttcattctccattatctaaggctccttccacctttggagcaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ctagctggccaccctccttcattctccattatctaaggctccttccacctttggagcaag 317

                                                                       
Query: 245 atgaatattacaggtcttgacatagggaaagtgtggtccgctgaccccacacaaccatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atgaatattacaggtcttgacatagggaaagtgtggtccgctgaccccacacaaccatca 257

                                                               
Query: 305 agacttcaacctattgctgccctttcttcccagaaaggaataagttctaatc 356
           |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 256 agacttcaacctattgctgccctttcttcccagaaaggaataagctctaatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no071_b11.g1 MSMg01no071_b11.g1 CHROMAT_FILE:
MSMg01no071_b11.g1 PHD_FILE: MSMg01no071_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:23 2005
         (321 letters)



>mm_chr15_25438698_25439418
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 318/321 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaataagctcagatgcattcccagcaataaatcccacagacgcactggggagcagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaataagctcagatgcattcccagcaataaatcccacagacgcactggggagcagct 260

                                                                       
Query: 61  ttggtgtgcagctgtttaggaagctgggctcggaatgcagggagagtcgtggtgggtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtgtgcagctgtttaggaagctgggctcggaatgcagggagagtcgtggtgggtgag 320

                                                                       
Query: 121 agatatatctgccatgaacgttcttcctgactccccatgcaacttggtgaccaggttatt 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 agatatatctgccatgaacgttcttcctgactccccacgcaacttggtgaccaggttatt 380

                                                                       
Query: 181 gagacaggaacacaaatgtgtttcaagtagcttttcttcaacctggagagtaagcagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagacaggaacacaaatgtgtttcaagtagcttttcttcaacctggagagtaagcagcag 440

                                                                       
Query: 241 gcaccatcacaagtatggagagagtaaaattccttgctcagtgatgcatactgccttgac 300
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaccatcataagtagggagagagtaaaattccttgctcagtgatgcatactgccttgac 500

                                
Query: 301 cgattggggcctttgaaccag 321
           |||||||||||||||||||||
Sbjct: 501 cgattggggcctttgaaccag 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)