BAC Information

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BAC

Clone NameMSMg01-071J18
Chromosome15 (Build37)
Map Location 69,972,369 - 70,176,866
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071J18.T7 (MSMg01no071_j18.b1)MSMg01-071J18.TJ (MSMg01no071_j18.g1)
ACCAG295351AG295352
length706701
length of high quality
(start - end)
268 (42 - 309)298 (69 - 366)
definitionCHROMAT_FILE: MSMg01no071_j18.b1 PHD_FILE: MSMg01no071_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:04 2005CHROMAT_FILE: MSMg01no071_j18.g1 PHD_FILE: MSMg01no071_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,176,603 - 70,176,866)(69,972,369 - 69,972,663)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACCCATATTCACAGACACACATACAAACACCCTACACATTAAAAAATAA
AATTATATTTTAAAAATATCTTTTAAAAAAGAACTTAAAGTGTTAGAGAA
ATCAAACAAATAGAGTATCAGTATTGAAATAAAAAAATTCATGATTAAAA
ATATATCTCTTAAAATCCCAGGTAATTGAGTTTGATGCAAGATTTCAGCA
CAGAGATTATAAAAGAATCTTGAACCATCCCTGTTGATCACATTTGAAAG
CAGATAGGAAACCATCTCTCAGGCAGGAACATGTTAAACTTCCATGCTGC
TGAGTCAAACCTGAGCCAGACTTACTTTGTGGCTAATACTTCATAATAGT
TATGTGCTCAATAAATGTCCAGCCTGAATATGGATTTCACAAAAATGCAA
CACTATAGCCACCCCAAGGGTTTATGATCCATAATTCATTTTGGAAAATG
GCTCGATTCACTTGAAGCAGCAAAATCTGAGAACTTCCCGGCTCATAATA
ATGTTAGATGGAGCAATCTCCCATGTTAATTGTGTGCCGAGAATAAAAGT
CTTATTGTTTACAAACGCATCCATCCTGTTTTTCCTCAATTCCGTTGCGG
CCCATACTGAATTATCTGAAGAGTAACATCCATAATTCATTTTTATTTCT
TCATCT
ACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTGAAAGGCCTAGACCTCACAGGTAGCCACT
GAACAGCAGGAGGAATGACCAATGGAAACTCGTGTTTCAGATACAATAAA
GCCTGTATTCTGCCTCAATCATCATCCTGTTTATAGGTAAAGCCAAACCA
TGTGTTCAGTCAAAAAGTTTCTGAAAAGCAAGGCATGTAAATCAAATTGT
AATAACAGGACCGTTAAAACTTTATTAATCATGTAAGTATATTGTCTACA
ATAAAACTTTTATTATATGTATTATATGATAGGGTACAATATTATATAAT
CAGTTCAATCTTACAAATATGTAAATAGAGAATTATAAAGATGAAGTAAT
TGCCCTATGCCTACTCATAGTATGTGACAGTTGGTAATATAACTCATGGA
TTATTCATTATAGTGCATGCACTAACTACTATTTCACATTGTTCTGATAA
ATTAGTATTTTTGTCCTTCTTGAATATCTGAATTACACTTATAAGTATGT
GAAGAAATAACCTTATGAATACTCTGATACTTAAAATGTATAACCTGCAT
TTCTTAGTTCTTACCAAATACGATTTCTTTTACATAAAAGATAGATACCA
GTCATTATTTCAAAAAATTATATTTATGTATCATTCACTACATATTTTAT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_j18.b1 MSMg01no071_j18.b1 CHROMAT_FILE:
MSMg01no071_j18.b1 PHD_FILE: MSMg01no071_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:04 2005
         (268 letters)



>mm_chr15_70176314_70176981
          Length = 668

 Score =  503 bits (260), Expect = e-147
 Identities = 263/264 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacccatattcacagacacacatacaaacaccctacacattaaaaaataaaatta 64
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 553 gaattcacccatattcacagacacacatacaaacaccctacacaataaaaaataaaatta 494

                                                                       
Query: 65  tattttaaaaatatcttttaaaaaagaacttaaagtgttagagaaatcaaacaaatagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tattttaaaaatatcttttaaaaaagaacttaaagtgttagagaaatcaaacaaatagag 434

                                                                       
Query: 125 tatcagtattgaaataaaaaaattcatgattaaaaatatatctcttaaaatcccaggtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tatcagtattgaaataaaaaaattcatgattaaaaatatatctcttaaaatcccaggtaa 374

                                                                       
Query: 185 ttgagtttgatgcaagatttcagcacagagattataaaagaatcttgaaccatccctgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttgagtttgatgcaagatttcagcacagagattataaaagaatcttgaaccatccctgtt 314

                                   
Query: 245 gatcacatttgaaagcagatagga 268
           ||||||||||||||||||||||||
Sbjct: 313 gatcacatttgaaagcagatagga 290


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no071_j18.g1 MSMg01no071_j18.g1 CHROMAT_FILE:
MSMg01no071_j18.g1 PHD_FILE: MSMg01no071_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:04 2005
         (298 letters)



>mm_chr15_69972169_69972866
          Length = 698

 Score =  501 bits (259), Expect = e-146
 Identities = 286/295 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaaaggcctagacctcacaggtagccactgaacagcaggaggaatgaccaatggaaa 60
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tctgaaaggcctagacctcacagatagccactgaacagcaggaagaatgaccaatggaaa 260

                                                                       
Query: 61  ctcgtgtttcagatacaataaagcctgtattctgcctcaatcatcatcctgtttataggt 120
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 261 ctcgtgtttcagatacaataaagcctggattctgcctcaatcaccatcctgtttataggt 320

                                                                       
Query: 121 aaagccaaaccatgtgttcagtcaaaaagtttctgaaaagcaaggcatgtaaatcaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagccaaaccatgtgttcagtcaaaaagtttctgaaaagcaaggcatgtaaatcaaatt 380

                                                                       
Query: 181 gtaataacaggaccgttaaaactttattaatcatgtaagtatattgtctacaataaaact 240
           ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 381 gtagtaacaggactgttaaaactttattaatcatctaagtatattgtctacaatgaaact 440

                                                                  
Query: 241 tttattatatgtattatatgatagggtacaatattatataatcagttcaatctta 295
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttattacatgtattatatgatagggtacaatattatataatcagttcaatctta 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)