Query= MSMg01no072_e18.b1 MSMg01no072_e18.b1 CHROMAT_FILE:
MSMg01no072_e18.b1 PHD_FILE: MSMg01no072_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:59 2005
(468 letters)
>mm_chr15_19616268_19617135
Length = 868
Score = 580 bits (300), Expect = e-170
Identities = 406/468 (86%), Gaps = 44/468 (9%)
Strand = Plus / Plus
Query: 2 ggaattcctgcagtctccggccttttgatccatagctcctatcttatcaccatgttatcg 61
|||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |
Sbjct: 202 ggaattcctgcagtctttggcctgttgatccatagctcctttcttatcaccatgttatag 261
Query: 62 ttctctgaagttctgaatgtgagggattttaattcaggtgttcactcacatcttaaatag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttctctgaagttctgaatgtgagggattttaattcaggtgttcactcacatcttaaatag 321
Query: 122 tcggatatggattgcatctttagtttctcagaagctgattacttacttgtttgttgtttg 181
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 322 tcagatatggattgcatctttagtttctcagaagctgataacttacttgtttgttgtttg 381
Query: 182 tttttatgttgttgttgtttgtttgttgttgtcctttggctgtgtcctctagatgaattt 241
|||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 382 tttttatgttgttgttgt--------------cctttggctgtgtcctctggatgaattc 427
Query: 242 tttcacatgtagtgaagacaccttgataaaatgcccacacatttctacttactctaccat 301
||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 428 tttcacatgtagtgaagacaccttgataaaaagcccacaaatttctactt---------- 477
Query: 302 aacccactcactccacttttgtcttctaaatcacagccacctttcagtgtccttttctac 361
|||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 478 ------------------ttgtcttccaaatcagagccacctttcagtgtccttttctac 519
Query: 362 ccagtgtgttagcatttcttccctgctgttttctgctgggactctgctttttt-gtcctc 420
||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 520 ccagtgtattagcatttcttccctgatgttttctgctgggactctgctttttttgtcctc 579
Query: 421 caactgcccacaagtccttgcttctcacttccttggagactggctatc 468
||||||||||||||| ||||||| ||| |||||||||||||| |||||
Sbjct: 580 caactgcccacaagttcttgctt-tcatttccttggagactgtctatc 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_e18.g1 MSMg01no072_e18.g1 CHROMAT_FILE:
MSMg01no072_e18.g1 PHD_FILE: MSMg01no072_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:59 2005
(449 letters)
>mm_chr15_19743048_19743895
Length = 848
Score = 814 bits (421), Expect = 0.0
Identities = 443/451 (98%), Gaps = 5/451 (1%)
Strand = Plus / Minus
Query: 1 ttagac-cattcatcagaggacataatgatgctcagttgactgtcacacagttttctttt 59
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttagacacattcatcagaggacataatgatgctcagttgactgtcacacagttttctttt 589
Query: 60 cgtgctacagacactgtgtacaactctgtttccgtgtgcttctgatatgccttgataagg 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cgttctacagacactgtgtacaactctgtttccgtgtgcttctgatatgccttgataagg 529
Query: 120 agagcggagaggtcgggggaaggttagataagtaaaaattactttcaacaagaaggcttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agagcggagaggtcgggggaaggttagataagtaaaaattactttcaacaagaaggcttt 469
Query: 180 cagggaagaagttgaacacatatgctaagcagaccaaaacatgaggatacagtagatgca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cagggaagaagttgaacacatatgctaagcagaccaaaacatgaggatacagtagatgca 409
Query: 240 gttaacgacttgtgcatctaccta-aaatacatctaccacacattccttcatgaacttta 298
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 408 gttaacgacttgtgcatctacctataaatacatctaccacacattccttcatgaacttta 349
Query: 299 acttttaaattttgtcttctacattgtatttaatatgttaatttctactctaatgtttgc 358
||||||||| ||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct: 348 acttttaaactttgtcttccacattgtatttaatatgttaatttctact-t--tgtttgc 292
Query: 359 tgataatttgaaagagagatttccatcaccaggcatataggaattaaaggagtactttta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgataatttgaaagagagatttccatcaccaggcatataggaattaaaggagtactttta 232
Query: 419 ctgaaatatagcatgtgcatatcctcttaca 449
|||||||||||||||||||||||||||||||
Sbjct: 231 ctgaaatatagcatgtgcatatcctcttaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 848
Length adjustment: 10
Effective length of query: 439
Effective length of database: 838
Effective search space: 367882
Effective search space used: 367882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
