BAC Information

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BAC

Clone NameMSMg01-073P24
Chromosome15 (Build37)
Map Location 32,190,374 - 32,190,492
singlet/doubletsinglet
Overlap geneSema5a
Upstream geneDap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073P24.T7 (MSMg01no073_p24.b1)MSMg01-073P24.TJ (MSMg01no073_p24.g1)
ACCAG297158AG297159
length689791
length of high quality
(start - end)
---124 (132 - 255)
definitionCHROMAT_FILE: MSMg01no073_p24.b1 PHD_FILE: MSMg01no073_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:14 2005CHROMAT_FILE: MSMg01no073_p24.g1 PHD_FILE: MSMg01no073_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTCGGGAGCCAANANNNNCATTTTCGTACCCGCCNGANNNNNNNNGG
TTGCCCCACCGNAAGAGNNNNGGAGGNGGGGAGNNGAGNGGAAGGANGGT
TTACCGCAAAAAACGACGGGGNAGANAAAGGGGGGAAAGAGAGAAAAGAG
GAAAGGGGAAGAGAAAAAGGAAGAGACGAGGACAANNNCNNNGANANAAG
NNAGGAGAGGGCAAAAAGAGAAGGAGGAAAGTTTTTTATAAGGGAGATAC
ATACAGCTAGGTAGATCTTCCAAATGCCTCAGACAGCCACACACCATTTT
TATGGTTTTTACGAGAACAAACCACCGGCACCCAACAATTTTTTTTTTCC
CCCCCCCCCACCCCCCAAAGGATAGCGCATCGCGTATTGAAAACAGGCCT
GTACCAAAAAAAAAAGCAGTCCACCCTGAGGGCGACCACACCGCATACTA
CCTTACACAACGAGACAAGGACAAAGTCCAGAGACCCCTAAACACCTTGG
CGAAAAAAAGCGAGAATGTTCTCCAGCATGCAACACACCCCGGTGCACCA
CCAACGATCTCCGATCAAGAAAATCCGCTGGAGGAGACGCCCCTTTCCCA
CGTAATTCGACCTCTCCATAACGGACTTCCACCCACTTTTTTTTTTTTTG
CCACGAGGTATACGGCCAATACAATTACACACAGAAGTG
TTTTCTTTTTCTTTNTCCTCCCTTCTTTTTCCTCTTTTTCCCCTTTTCCN
NANNAACACGATGCTGTGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCTGCATTCCAGATAG
GTCACATAATTTGTAACTAGAAGCACATCTCGTTGATCTCACAGGCAGGT
TGAAGTGTCTTTGAGGGTAGCTGTGGCTACTTTCATCAGGTCCAAATGTA
TTCTAGAGCTCGGATGGTTTCTAATGATCCAAAATTAGTAATGGCAGTCT
TAGACATCGCATGCGTTGAACTCGCGAGACAGTTCACCACATTCAGCATC
ATCTGGATTGTCACCTTGTAATCCCACACAACCGTGTAGCGTCTTTGTTC
AAACTAATATATGGCTTCTCTGGAGAGAACCATTAGGTTTATCCGCCCCC
CCTCAAATCTGTATGCTGTATAAAACTGCTGCAGTCTGTACCCAGCTCAT
TAAAATATCGCTAGATACATCGTTGGCGTACTCTCTGTGACCCTCTGACC
GACCATGGCGAACCGCTGATCCCTGCCTTCCTTCCTCCATTCCATGTACC
TGAAAAAGAGGCCTTAGGACAATGCCGTTGCTTCTCCCATTTCATAAAGA
ATCTATCCCTCATTATCCCCCTTCTCTCTGTCCCACATCCAACGGCTTTC
ATTGCTTACTCCTGCGTAACATATCTGTGCTTTCCGCGCGTTCCCCATTT
CTTCCTAGACACCCATGTATTCCCCTCGCCTTCCCCCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_p24.g1 MSMg01no073_p24.g1 CHROMAT_FILE:
MSMg01no073_p24.g1 PHD_FILE: MSMg01no073_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:14 2005
         (124 letters)



>mm_chr15_32190174_32190693
          Length = 520

 Score =  207 bits (107), Expect = 2e-58
 Identities = 119/123 (96%), Gaps = 4/123 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccctgcattccagataggtcacataatttgtaactagaagcacatctcgttgatctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttccctgcattccagataggtcacataatttgtaactagaagcacatct-gttgatctca 259

                                                                       
Query: 61  caggcaggttgaagtgtctttgagggtagctgtggctactttcatcaggtccaaatgtat 120
           |||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 260 cagg-aggttgaagtgt-tttgagggtagctg-ggctactttcatcaggtccaaatgtat 316

              
Query: 121 tct 123
           |||
Sbjct: 317 tct 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 520
Length adjustment: 8
Effective length of query: 116
Effective length of database: 512
Effective search space:    59392
Effective search space used:    59392
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)