Query= MSMg01no074_g12.b1 MSMg01no074_g12.b1 CHROMAT_FILE:
MSMg01no074_g12.b1 PHD_FILE: MSMg01no074_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:46 2005
(409 letters)
>mm_chr15_40722680_40723488
Length = 809
Score = 704 bits (364), Expect = 0.0
Identities = 395/408 (96%), Gaps = 6/408 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtgtttcccacaaaaattattggcccagataaattcaactctgttttcagatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgtttcccacaaaaattattggcccagataaattcaactctgttttcagatt 264
Query: 65 tctaatattttt---acccttctcagtgctattacatattatttcatttagaggaaataa 121
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctaatattttttata---ttctcagtgctattacatattatttcatttagaggaaataa 321
Query: 122 gaattaaatacaagatcctgggtatagttaagagttaaacacagcattaaagtggttgac 181
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaattaaacacaagatcctggttatagttaagagttaaacacagcattaaagtggttgac 381
Query: 182 tcttcctacttttcagatgtttattgactgagtcactttcttgtattagtagatcaatca 241
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 tcttcctacttttcagatgtttattgactgagtcacttccttgtattagtagatcaatca 441
Query: 242 actacttctagtatatggtcatcctgttgatgaactatattatatatgtatatacatata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actacttctagtatatggtcatcctgttgatgaactatattatatatgtatatacatata 501
Query: 302 taatgtagttcatatatatgcatatataaacatatatgtatataacaatatgtatataat 361
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 502 taatatagttcatatatatgcatatataaacatatatgtatataataatatgtatataat 561
Query: 362 aatatacatacaacatataagaaaatgtatatgtgtgtgtatatatgt 409
|||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 562 aatatacatataatatataagaaaatgtatatgtgtgtgtatatatgt 609
Score = 78.1 bits (40), Expect = 1e-18
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 271 atgaactatattatatatgtatatacatatataatgtagttcat 314
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 514 atgaactatattatatatgtatatacatatataatatagttcat 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_g12.g1 MSMg01no074_g12.g1 CHROMAT_FILE:
MSMg01no074_g12.g1 PHD_FILE: MSMg01no074_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:46 2005
(280 letters)
>mm_chr15_40807021_40807700
Length = 680
Score = 476 bits (246), Expect = e-139
Identities = 273/282 (96%), Gaps = 4/282 (1%)
Strand = Plus / Minus
Query: 1 ccttaag-gatatctcctcctgatatattttattcctggtctcagaaccctggttagtat 59
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ccttaagatatatctcctcctgatatattttattcctggtctcagaaccctggttagtat 421
Query: 60 tatttttttctcctttaaataattgttttacttcttgaccattcattttttcttcccagt 119
|| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 420 ta-ttttttctcctttaaataattgttttacttcttggccattca-tttttcttcccagt 363
Query: 120 gattcttttcatggattcaactgcttattagctgaaataataatactgatattttccatc 179
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 362 gattcttttcatggattcaactgcctattagctaaaataataatactgatattttccatc 303
Query: 180 atgttggctgtttccatgtgatgattccaaagtatttttaggatagcttttttttt-ctt 238
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 302 atgttggctgtttccatgtgatgattccaaagtatttttaggacagcttttttttttctt 243
Query: 239 tgtgaaaagcaattaataagacaaagagaaataatggccaga 280
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgtgaaaagcaattaataagacaaagagaaataatggccaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
