BAC Information

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BAC

Clone NameMSMg01-076B17
Chromosome15 (Build37)
Map Location 62,836,830 - 62,837,019
singlet/doubletsinglet
Overlap genenone
Upstream genePvt1, LOC100040584, H2afy3, LOC100040430, Tsg101-ps
Downstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076B17.T7 (MSMg01no076_b17.b1)MSMg01-076B17.TJ (MSMg01no076_b17.g1)
ACCAG298762AG298763
length708739
length of high quality
(start - end)
372 (41 - 412)190 (75 - 264)
definitionCHROMAT_FILE: MSMg01no076_b17.b1 PHD_FILE: MSMg01no076_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:58 2005CHROMAT_FILE: MSMg01no076_b17.g1 PHD_FILE: MSMg01no076_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATAGCCTCTCCGCCTCAAGATCTCCATGCCAAGATTCAGATCAGAAACTT
GTATCTCCCAGCCTCCAGATTAGGACCACTGGTGAGCCTCCATTCTGGAT
TGTAGTTCATTCCAGATATAGTTAAGTTGACAACAGGAATAGCTACTACA
TGTTACAGAACATGGCAATGTGTGTGTGTGTGCACGTGTTTATTGGATAT
TTTCTTTATATACATTTCAAATATTAATCCCTTTCCTGTTTCCCCCCCTG
CCCCCAGAAACCTGCTATTCTATCCACCTTACCCCTGCTTCTATGAGAAT
ATTCCCCCATCTACCCACCCACCCACTCCCACATCCCCACCCTCCAATTC
CTCTATACTGCCCTATTGAACTTTAACAGGACCTAGGTCCTCTCCTCCCA
CTGATGTCCAATTAGATAATCTTCTGCTACATATGTTAGCTGGAGCCATG
TGTATCTCCCTATCCACTCTTTGGTTGTCGCCTTATTCCTTGGTATTCCC
GCCAGCTGTCTGTTTGATTTTCCCTTTCTCCCTTCTCCCCTCTTACACTC
TTTTCTTTCTTTTCCTCTTTTTCACTTTCTTTCCGTCCCTTTTTTTGCCC
TCATTTTGTTGCCTTCCCTTCTTCTTTTCCCTCCTTCGCCTCCCTTTCGT
TCTCTCCC
CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGTGGTTATGGGTGCTGAAACAGA
AGGAAGAGGACAGGGGTCCTCTGCGACAGAAGCTTCATTAATTCTAATTG
TCATGTAAAGGGTTTGAATGTGTATACTTTTGTGGTCTATACTGATGCCT
TGTCATCTACCCTCATACGAACTATATCAACTTACAACTATACATTTCTA
CTTTATACCTCAGTGTCTTGGCCACCTTTTCTCCTCTATTCAGAAAGCAA
CAAAGTTATCACACAATATCATTGTATACTATCCCCACATGAATCCAGAC
TTCAGTCTTGCTCACACACCCCCTCTGCCTATGTTAACTCCCTCCATAGT
ATGCTTATCCCATACCCCTCCAACTATCTCACTCATAGAATACCTGCACT
TATACCTCCATCCGTTACTTGCCTCTCCTACTATATATACAATGTACCCC
TTTCCTCACCTTCACTCCTCTTTATCATCTATCATCCCTTTCTATCTTCT
ACTCTTCTTACCCCCCTTCCCCTCTCCCTTGTTGTCTCTTCCCCAAATAC
CTTATCCTCTTTCCTTTCCCTCCCTTCTCCCTTCCTCCTTTTTTCCCCTT
CTCTACCCTCTCCTTCTTCCTTCTTTCAGACCTCTCACCCTTATCCCTAC
CCCTCACTTCTTAATAATCTCTCCACTCATCTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_b17.g1 MSMg01no076_b17.g1 CHROMAT_FILE:
MSMg01no076_b17.g1 PHD_FILE: MSMg01no076_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:58 2005
         (190 letters)



>mm_chr15_62836630_62837219
          Length = 590

 Score =  329 bits (170), Expect = 7e-95
 Identities = 185/190 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggtggttatgggtgctgaaacagaaggaagaggacaggggtcctctgcgacagaagct 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 taggtggttttgggtgctgaaacagaaggaagaggacaggggtcctctgtgacagaagct 260

                                                                       
Query: 61  tcattaattctaattgtcatgtaaagggtttgaatgtgtatacttttgtggtctatactg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatttattctaattgtcatgtaaagggtttgaatgtgtatacttttgtggtctatactg 320

                                                                       
Query: 121 atgccttgtcatctaccctcatacgaactatatcaacttacaactatacatttctacttt 180
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgccttgtcatctaccctcacatgaactatatcaacttacaactatacatttctacttt 380

                     
Query: 181 atacctcagt 190
           ||||||||||
Sbjct: 381 atacctcagt 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)